# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fp1D 372 0.7189 a.4.5.29,c.66.1.12 59939,59940 2p8jA 209 0.7812 1ve3A 227 0.9094 c.66.1.43 120010 2r3sA 335 1.235 1fp2A 352 1.410 a.4.5.29,c.66.1.12 59941,59942 1qzzA 374 1.630 a.4.5.29,c.66.1.12 96719,96720 1tw3A 360 1.875 a.4.5.29,c.66.1.12 107373,107374 1im8A 244 2.131 c.66.1.14 66212 2nxcA 254 2.366 c.66.1.39 138739 1id1A 153 2.484 c.2.1.9 62286 1lssA 140 2.765 c.2.1.9 74246 2hmvA 144 2.801 c.2.1.9 136615 3c85A 183 2.954 1kyzA 365 3.250 a.4.5.29,c.66.1.12 73312,73313 1x19A 359 3.521 1q1rA 431 4.032 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3d2lA 243 4.084 2ip2A 334 4.216 2pxxA 215 4.757 2fk8A 318 5.483 c.66.1.18 133648 1wznA 252 5.863 c.66.1.43 121525 1l1eA 287 6.367 c.66.1.18 73454 1ks9A 291 6.707 a.100.1.7,c.2.1.6 68857,68858 2ffiA 288 7.252 c.1.9.15 133385 1lsuA 147 7.361 c.2.1.9 74250 2avnA 260 7.388 c.66.1.41 127380 3bgvA 313 7.712 1nhsA 447 7.866 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1zq9A 285 8.026 c.66.1.24 125505 2axqA 467 8.089 1y8cA 246 8.130 c.66.1.43 116563 2hmaA 376 8.336 1nhpA 447 8.410 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2p7iA 250 9.004 3cc8A 230 9.484 1x13A 401 10.23 2g1uA 155 11.08 2avdA 219 11.37 c.66.1.1 127377 3b3fA 341 11.91 2gpyA 233 12.17 2vdvE 246 12.32 2dwcA 433 13.87 2v3aA 384 13.93 3bwyA 214 14.23 2i6gA 199 14.48 c.66.1.44 137096 1xtpA 254 14.80 c.66.1.42 116031 1l7dA 384 15.10 c.2.1.4,c.23.12.2 77774,77775 2pn1A 331 15.99 1uirA 314 16.31 c.66.1.17 99429 1ri5A 298 16.35 c.66.1.34 97502 2ew2A 316 16.36 1kpgA 287 16.70 c.66.1.18 68735 1wy7A 207 17.19 c.66.1.32 121433 2v74B 346 17.44 1qyrA 252 17.58 c.66.1.24 104657 1kjqA 391 17.82 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1xxlA 239 18.22 c.66.1.41 116203 2bm8A 236 18.39 c.66.1.50 128771 2aefA 234 19.72 2o57A 297 20.54 2h00A 254 20.63 c.66.1.54 135925 3cggA 195 21.40 1f3lA 321 21.48 c.66.1.6 59630 2ex4A 241 21.97 c.66.1.42 132516 2gh1A 301 22.28 c.66.1.49 135170 1m6iA 493 22.63 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1a53 247 22.69 2pbfA 227 23.15 2frnA 278 24.36 c.66.1.47 133993 2dplA 308 24.62 2r9zA 463 24.76 1xvaA 292 25.41 c.66.1.5 34183 2cduA 452 26.06 2igtA 332 26.37 c.66.1.51 137401 3bofA 566 26.99 1uwvA 433 27.21 b.40.4.12,c.66.1.40 100128,100129 2bzgA 232 28.30 c.66.1.36 129559 2cl5A 221 28.44 c.66.1.1 130570 2yrxA 451 28.53 1k1xA 659 29.35 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1ne2A 200 29.84 c.66.1.32 85586 2ozvA 260 29.90 1q7zA 566 30.29 c.1.21.2,c.1.26.1 96090,96091 1yzhA 214 31.05 c.66.1.53 124277 1w78A 422 32.16 2gqwA 408 32.44 1zx0A 236 33.20 c.66.1.16 125757 1ni5A 433 34.74 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1yqdA 366 34.95 2fytA 340 35.03 c.66.1.6 134391 1trbA 320 35.14 c.3.1.5,c.3.1.5 30529,30530 1kyqA 274 35.25 c.2.1.11,e.37.1.1 73281,73282 1ls6A 295 35.81 c.37.1.5 91115 1vl5A 260 36.02 c.66.1.41 108720 1c1dA 355 36.51 c.2.1.7,c.58.1.1 30270,33918 1yrlA 491 36.82 2bg9E 370 37.67 2gb4A 252 37.79 2dc1A 236 38.99 3ladA 476 39.51 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2vduE 254 39.61 1pjcA 361 40.06 c.2.1.4,c.23.12.2 30101,31361 1l3iA 192 40.52 c.66.1.22 77676 1j5xA 342 40.64 c.80.1.1 71591 1j99A 293 40.82 c.37.1.5 71618 1i1nA 226 41.33 c.66.1.7 71102 1fl2A 310 41.95 c.3.1.5,c.3.1.5 59869,59870 1trb 320 43.00 1fmjA 351 43.05 c.37.1.5 59879 2fcaA 213 43.22 c.66.1.53 133262 2pjdA 343 43.30 2fhpA 187 43.74 c.66.1.46 133495 1gsoA 431 44.13 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2b78A 385 44.45 b.122.1.9,c.66.1.51 128025,128026 2yxdA 183 44.90 2bg9A 370 46.36 2esrA 177 46.43 c.66.1.46 132344 1n0wA 243 48.64 c.37.1.11 79772 2ov8A 288 49.08 2ibtA 421 49.79 c.66.1.27,d.287.1.1 137205,137206 2yqzA 263 50.72 2cdcA 366 50.97 1i4wA 353 51.04 c.66.1.24 66028 2r6oA 294 53.05 1xdiA 499 53.39 c.3.1.5,d.87.1.1 115160,115161 1rjdA 334 53.84 c.66.1.37 97558 1pj5A 830 53.86 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1zrhA 274 55.49 2hnkA 239 59.25 1lvlA 458 59.55 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2vojA 371 60.40 1h1dA 221 60.71 c.66.1.1 83452 2cy8A 453 61.13 2as0A 396 61.63 b.122.1.9,c.66.1.51 127227,127228 1or8A 340 61.93 c.66.1.6 93451 1wxxA 382 63.39 b.122.1.9,c.66.1.51 121418,121419 1y8qA 346 65.51 1xdzA 240 67.04 c.66.1.20 115196 1jq5A 370 67.05 e.22.1.2 67084 2rebA 352 68.85 c.37.1.11,d.48.1.1 32282,38767 1vimA 200 69.18 c.80.1.3 100758 1zpvA 91 72.33 d.58.18.7 125475 1yqzA 438 73.04 1mqsA 671 73.11 e.25.1.1 79414 3bkwA 243 74.29 1bg6 359 74.40 1nw3A 416 78.34 c.66.1.31 86288 1zejA 293 81.04 2hp1A 432 81.23 1o54A 277 81.40 c.66.1.13 92482 2fpoA 202 81.75 c.66.1.46 133909 1rrmA 386 83.22 e.22.1.2 105081 1qamA 244 83.93 c.66.1.24 34220 1a0cA 438 85.67 c.1.15.3 29529