# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p8jA	209	1.608		
1ve3A	227	2.073	c.66.1.43	120010
1fp2A	352	2.487	a.4.5.29,c.66.1.12	59941,59942
2pxxA	215	3.716		
1im8A	244	4.332	c.66.1.14	66212
1fp1D	372	4.677	a.4.5.29,c.66.1.12	59939,59940
2hmvA	144	5.214	c.2.1.9	136615
1lssA	140	5.926	c.2.1.9	74246
1qzzA	374	6.337	a.4.5.29,c.66.1.12	96719,96720
1lsuA	147	7.183	c.2.1.9	74250
2nxcA	254	7.732	c.66.1.39	138739
3c85A	183	8.571		
1l1eA	287	8.586	c.66.1.18	73454
2fk8A	318	9.401	c.66.1.18	133648
1kpgA	287	10.26	c.66.1.18	68735
3d2lA	243	10.41		
3cc8A	230	10.76		
1id1A	153	11.44	c.2.1.9	62286
1l7dA	384	12.19	c.2.1.4,c.23.12.2	77774,77775
1q1rA	431	12.46	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1yqdA	366	16.04		
2p7iA	250	17.34		
2vdvE	246	17.87		
1x13A	401	18.37		
2ip2A	334	18.62		
1pjcA	361	20.02	c.2.1.4,c.23.12.2	30101,31361
1nhpA	447	20.22	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1y8cA	246	21.40	c.66.1.43	116563
2e7fA	262	21.78		
1c1dA	355	22.09	c.2.1.7,c.58.1.1	30270,33918
1nhsA	447	22.55	c.3.1.5,c.3.1.5,d.87.1.1	30555,30556,40199
1i1nA	226	23.14	c.66.1.7	71102
2aefA	234	23.28		
2avnA	260	23.37	c.66.1.41	127380
2r3sA	335	23.67		
2axqA	467	23.68		
2v3aA	384	24.04		
2ogyA	262	24.11		
2i6gA	199	24.64	c.66.1.44	137096
2fcaA	213	25.26	c.66.1.53	133262
2igtA	332	25.40	c.66.1.51	137401
1zq9A	285	27.39	c.66.1.24	125505
2g1uA	155	28.21		
1yzhA	214	28.52	c.66.1.53	124277
1k1xA	659	29.34	a.8.3.2,b.30.5.8,c.6.2.2	84279,84280,84281
1kyqA	274	29.40	c.2.1.11,e.37.1.1	73281,73282
1f6yA	262	32.54	c.1.21.2	29673
2bg9E	370	32.97		
1kyzA	365	33.17	a.4.5.29,c.66.1.12	73312,73313
1pj5A	830	35.42	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
2dplA	308	36.00		
2dwcA	433	36.00		
2cf5A	357	36.06		
2r9zA	463	36.15		
1uufA	369	37.24	b.35.1.2,c.2.1.1	100006,100007
2pbfA	227	37.36		
1j5xA	342	37.37	c.80.1.1	71591
2vduE	254	37.63		
3cvoA	202	37.63		
3bofA	566	38.02		
1ls6A	295	39.14	c.37.1.5	91115
1zrhA	274	39.23		
1tw3A	360	39.53	a.4.5.29,c.66.1.12	107373,107374
1x19A	359	39.66		
1a53	247	42.02		
2gqwA	408	42.48		
2pn1A	331	43.26		
1qyrA	252	44.67	c.66.1.24	104657
2vojA	371	45.69		
1qstA	160	46.12	d.108.1.1	40804
2bg9A	370	47.49		
1kjqA	391	48.47	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2o57A	297	48.90		
1zpvA	91	49.70	d.58.18.7	125475
1m6iA	493	50.13	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2cduA	452	51.49		
3cggA	195	52.17		
2bzgA	232	52.19	c.66.1.36	129559
3bwyA	214	52.86		
1trb	320	52.88		
1uirA	314	57.98	c.66.1.17	99429
1jg1A	235	58.36	c.66.1.7	66661
1xxlA	239	58.52	c.66.1.41	116203
1wy7A	207	59.68	c.66.1.32	121433
2ew2A	316	62.50		
1q7zA	566	62.86	c.1.21.2,c.1.26.1	96090,96091
1ks9A	291	63.62	a.100.1.7,c.2.1.6	68857,68858
2ozvA	260	64.06		
1dl5A	317	64.75	c.66.1.7,d.197.1.1	64720,64721
1lluA	342	66.57	b.35.1.2,c.2.1.1	91064,91065
2gpyA	233	66.60		
2h00A	254	66.97	c.66.1.54	135925
1j99A	293	67.45	c.37.1.5	71618
1fl2A	310	68.77	c.3.1.5,c.3.1.5	59869,59870
1fmjA	351	69.54	c.37.1.5	59879
1trbA	320	69.73	c.3.1.5,c.3.1.5	30529,30530
2eq6A	464	71.55		
1ri5A	298	75.29	c.66.1.34	97502
1qamA	244	76.39	c.66.1.24	34220
2frnA	278	77.22	c.66.1.47	133993
1t8tA	271	78.03	c.37.1.5	106685
2esrA	177	78.10	c.66.1.46	132344
2gb4A	252	78.96		
1lvlA	458	79.18	c.3.1.5,c.3.1.5,d.87.1.1	30567,30568,40205
1bg6	359	79.30		
2yvlA	248	79.47		
1zx0A	236	79.69	c.66.1.16	125757
2ehbD	143	80.43		
1uxoA	192	80.67	c.69.1.31	108121
3bdiA	207	83.17		
2bm8A	236	84.45	c.66.1.50	128771
2fhpA	187	84.47	c.66.1.46	133495
1rjdA	334	85.11	c.66.1.37	97558
1uwvA	433	85.58	b.40.4.12,c.66.1.40	100128,100129
2ffiA	288	86.24	c.1.9.15	133385
2avdA	219	87.10	c.66.1.1	127377
2ov8A	288	88.12		
1w78A	422	88.73		
2dc1A	236	89.78