# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p8jA 209 1.396 1im8A 244 2.123 c.66.1.14 66212 1ve3A 227 2.304 c.66.1.43 120010 1fp1D 372 2.345 a.4.5.29,c.66.1.12 59939,59940 1fp2A 352 2.379 a.4.5.29,c.66.1.12 59941,59942 2pxxA 215 3.447 1lssA 140 3.536 c.2.1.9 74246 1qzzA 374 4.654 a.4.5.29,c.66.1.12 96719,96720 1l1eA 287 5.490 c.66.1.18 73454 2hmvA 144 5.911 c.2.1.9 136615 2fk8A 318 6.093 c.66.1.18 133648 2nxcA 254 6.561 c.66.1.39 138739 1id1A 153 6.607 c.2.1.9 62286 3c85A 183 7.948 1lsuA 147 8.288 c.2.1.9 74250 2ip2A 334 8.413 1kpgA 287 8.671 c.66.1.18 68735 2r3sA 335 9.611 2g1uA 155 11.30 3d2lA 243 11.51 3cc8A 230 11.68 2avnA 260 12.17 c.66.1.41 127380 1y8cA 246 12.80 c.66.1.43 116563 1q1rA 431 13.57 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2i6gA 199 16.11 c.66.1.44 137096 2vdvE 246 18.81 3cggA 195 20.15 1tw3A 360 20.36 a.4.5.29,c.66.1.12 107373,107374 2igtA 332 21.09 c.66.1.51 137401 2ffiA 288 21.52 c.1.9.15 133385 1trbA 320 22.15 c.3.1.5,c.3.1.5 30529,30530 1kyzA 365 22.79 a.4.5.29,c.66.1.12 73312,73313 1x13A 401 22.81 1zq9A 285 22.89 c.66.1.24 125505 2pbfA 227 23.08 2aefA 234 23.13 2bg9E 370 24.39 1trb 320 24.45 2p7iA 250 24.63 3cvoA 202 25.05 1nhpA 447 25.08 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2v3aA 384 25.59 1c1dA 355 25.89 c.2.1.7,c.58.1.1 30270,33918 1yqdA 366 26.04 1x19A 359 27.24 3bofA 566 27.90 2bg9A 370 28.05 2e7fA 262 28.47 2gqwA 408 28.93 2axqA 467 29.08 1nhsA 447 30.00 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2fcaA 213 31.64 c.66.1.53 133262 1ri5A 298 31.82 c.66.1.34 97502 1f6yA 262 34.65 c.1.21.2 29673 1l7dA 384 34.97 c.2.1.4,c.23.12.2 77774,77775 1uirA 314 35.03 c.66.1.17 99429 1pjcA 361 35.62 c.2.1.4,c.23.12.2 30101,31361 1a53 247 35.83 1i1nA 226 36.73 c.66.1.7 71102 1yzhA 214 37.19 c.66.1.53 124277 1k1xA 659 38.65 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1zpvA 91 38.99 d.58.18.7 125475 2avdA 219 39.60 c.66.1.1 127377 1ks9A 291 40.30 a.100.1.7,c.2.1.6 68857,68858 1ls6A 295 40.91 c.37.1.5 91115 1zrhA 274 41.39 1xtpA 254 41.88 c.66.1.42 116031 2ozvA 260 44.83 3bwyA 214 45.15 1kyqA 274 46.25 c.2.1.11,e.37.1.1 73281,73282 1m6iA 493 46.34 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2ew2A 316 47.75 1fl2A 310 47.77 c.3.1.5,c.3.1.5 59869,59870 1q7zA 566 48.15 c.1.21.2,c.1.26.1 96090,96091 2r9zA 463 48.59 2cduA 452 48.76 2ogyA 262 48.82 2vduE 254 49.52 2esrA 177 50.00 c.66.1.46 132344 2dplA 308 51.23 1pj5A 830 51.28 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2fhpA 187 52.46 c.66.1.46 133495 1j5xA 342 52.96 c.80.1.1 71591 2cf5A 357 53.97 1wy7A 207 54.45 c.66.1.32 121433 2bzgA 232 57.05 c.66.1.36 129559 2yvlA 248 57.60 2pujA 286 58.60 1j99A 293 58.93 c.37.1.5 71618 2gpyA 233 59.63 1lvlA 458 60.17 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1uwvA 433 60.40 b.40.4.12,c.66.1.40 100128,100129 1wznA 252 61.94 c.66.1.43 121525 2vojA 371 62.53 1fmjA 351 62.96 c.37.1.5 59879 2dwcA 433 63.33 2pn1A 331 63.56 1w78A 422 63.79 1zx0A 236 64.72 c.66.1.16 125757 1xxlA 239 65.63 c.66.1.41 116203 1ne2A 200 67.43 c.66.1.32 85586 1t8tA 271 67.65 c.37.1.5 106685 2pjdA 343 68.45 2frnA 278 70.45 c.66.1.47 133993 2v74B 346 70.72 1qstA 160 70.98 d.108.1.1 40804 3bdiA 207 71.95 1uufA 369 72.78 b.35.1.2,c.2.1.1 100006,100007 2o57A 297 72.79 1n0wA 243 74.72 c.37.1.11 79772 1ni5A 433 76.10 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2ex4A 241 76.47 c.66.1.42 132516 1xklA 273 76.56 c.69.1.20 115410 2bi7A 384 77.29 2vhxA 377 78.47 3b3fA 341 78.74 3c3yA 237 78.97 1u2eA 289 80.93 1rjdA 334 82.58 c.66.1.37 97558 1qyrA 252 83.12 c.66.1.24 104657 3bxoA 239 84.00 2b9wA 424 84.23 2fytA 340 86.16 c.66.1.6 134391 1uxoA 192 89.93 c.69.1.31 108121 1qamA 244 89.96 c.66.1.24 34220 2cvjA 180 89.98