# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fp2A 352 1.535 a.4.5.29,c.66.1.12 59941,59942 1im8A 244 2.336 c.66.1.14 66212 3ckkA 235 2.475 1kpgA 287 2.577 c.66.1.18 68735 1ve3A 227 2.597 c.66.1.43 120010 2r3sA 335 3.217 2pxxA 215 3.292 2fk8A 318 3.417 c.66.1.18 133648 1qzzA 374 4.285 a.4.5.29,c.66.1.12 96719,96720 2hmvA 144 4.835 c.2.1.9 136615 1l1eA 287 5.306 c.66.1.18 73454 1x19A 359 5.565 1fp1D 372 5.650 a.4.5.29,c.66.1.12 59939,59940 2p8jA 209 5.837 1eyeA 280 5.905 c.1.21.1 29672 2axqA 467 6.067 1lssA 140 6.127 c.2.1.9 74246 1lsuA 147 6.194 c.2.1.9 74250 2ip2A 334 6.223 3c85A 183 6.882 1q1rA 431 7.681 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1zq9A 285 7.706 c.66.1.24 125505 2dwcA 433 7.987 2vptA 215 8.079 2p7iA 250 8.168 3d2lA 243 8.255 2vdvE 246 8.481 1id1A 153 9.315 c.2.1.9 62286 2ffiA 288 9.677 c.1.9.15 133385 2vduE 254 10.17 2f8lA 344 10.38 c.66.1.45 133132 1kjqA 391 10.71 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1tw3A 360 11.00 a.4.5.29,c.66.1.12 107373,107374 3bxoA 239 11.23 3bwyA 214 11.90 2nxcA 254 12.70 c.66.1.39 138739 1dl5A 317 13.41 c.66.1.7,d.197.1.1 64720,64721 1m6iA 493 14.56 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2i87A 364 15.76 1lehA 364 15.82 c.2.1.7,c.58.1.1 30268,33916 2g1uA 155 15.82 1jayA 212 16.33 c.2.1.6 66478 2vhxA 377 16.61 1qyrA 252 16.68 c.66.1.24 104657 1yzhA 214 17.56 c.66.1.53 124277 3b3fA 341 18.34 1yrlA 491 18.52 2fcaA 213 18.83 c.66.1.53 133262 2v74B 346 19.48 2pjdA 343 21.37 1y8cA 246 21.44 c.66.1.43 116563 1l7dA 384 21.85 c.2.1.4,c.23.12.2 77774,77775 2pn1A 331 21.90 2pkfA 334 22.13 2vefA 314 22.77 2avnA 260 24.26 c.66.1.41 127380 2cl5A 221 24.61 c.66.1.1 130570 2ogyA 262 24.75 1f6yA 262 24.95 c.1.21.2 29673 2aefA 234 26.05 1pjcA 361 26.48 c.2.1.4,c.23.12.2 30101,31361 1uirA 314 26.49 c.66.1.17 99429 3cggA 195 26.96 1wznA 252 27.00 c.66.1.43 121525 2gh1A 301 27.71 c.66.1.49 135170 1k1xA 659 28.65 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2dc1A 236 28.80 1ri5A 298 29.00 c.66.1.34 97502 2v03A 303 29.50 1ks9A 291 29.70 a.100.1.7,c.2.1.6 68857,68858 2q4eA 362 30.12 2pqmA 343 30.15 2e7fA 262 30.38 1c1dA 355 31.25 c.2.1.7,c.58.1.1 30270,33918 1zx0A 236 31.42 c.66.1.16 125757 1f3lA 321 31.93 c.66.1.6 59630 1rjdA 334 32.00 c.66.1.37 97558 1qamA 244 34.22 c.66.1.24 34220 2i3dA 249 34.40 1hdoA 206 34.79 c.2.1.2 60965 1x13A 401 35.04 1a0cA 438 35.09 c.1.15.3 29529 2o57A 297 35.56 1xtpA 254 35.59 c.66.1.42 116031 1xgkA 352 36.79 c.2.1.2 115286 2v3aA 384 37.67 1trb 320 38.78 2cvjA 180 39.84 1xxlA 239 39.97 c.66.1.41 116203 1bg6A 359 40.67 a.100.1.5,c.2.1.6 18810,30214 1kolA 398 40.80 b.35.1.2,c.2.1.1 77474,77475 2eihA 343 41.20 1h1dA 221 41.36 c.66.1.1 83452 1k20A 310 41.88 c.107.1.1 68027 2gpyA 233 42.32 1ad1A 266 42.63 c.1.21.1 29668 2uyoA 310 44.23 3c6kA 381 45.41 2fytA 340 46.36 c.66.1.6 134391 1i36A 264 47.23 a.100.1.8,c.2.1.6 71108,71109 2qe6A 274 47.76 1xvaA 292 49.41 c.66.1.5 34183 2yxdA 183 50.15 1cjcA 460 51.50 c.3.1.1,c.4.1.1 30319,30604 2qfmA 364 51.55 2hqyA 305 51.67 3cvjA 243 51.75 1mv8A 436 51.88 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2ibtA 421 53.08 c.66.1.27,d.287.1.1 137205,137206 1bg6 359 53.08 2exxA 306 57.16 1ir6A 424 57.94 c.107.1.2 71342 1wy7A 207 60.13 c.66.1.32 121433 1epuA 591 60.77 e.25.1.1 43358 1r1dA 247 61.05 c.69.1.29 96813 2bi7A 384 61.51 2bg9E 370 61.81 2vojA 371 65.38 2avdA 219 65.54 c.66.1.1 127377 2i6gA 199 66.65 c.66.1.44 137096 3cvoA 202 67.65 2c29D 337 68.70 1x0vA 354 68.99 2cukA 311 69.09 2bm8A 236 69.12 c.66.1.50 128771 2fqxA 318 70.18 1hyhA 309 70.43 c.2.1.5,d.162.1.1 30150,42117 1vl5A 260 71.09 c.66.1.41 108720 1muwA 386 71.20 c.1.15.3 79495 1rkqA 282 71.60 c.108.1.10 97621 2q3bA 313 71.63 1kyzA 365 71.83 a.4.5.29,c.66.1.12 73312,73313 1nvmA 345 74.57 a.5.7.1,c.1.10.5 86249,86250 2eklA 313 75.35 2ew2A 316 76.33 2bg9A 370 77.72 2ozvA 260 78.81 2hnkA 239 78.96 1v8bA 479 79.01 c.2.1.4,c.23.12.3 113564,113565 1ls6A 295 79.08 c.37.1.5 91115 2bzgA 232 80.56 c.66.1.36 129559 3d64A 494 80.58 2q02A 272 81.47 1brt 277 81.47 2i2wA 212 81.64 1ne2A 200 81.70 c.66.1.32 85586 1qorA 327 82.32 b.35.1.2,c.2.1.1 24766,29782 1i4wA 353 82.71 c.66.1.24 66028 1f8yA 157 82.72 c.23.14.1 31395 1zejA 293 83.22 2gqwA 408 83.27 3cc8A 230 83.51 1l3iA 192 83.70 c.66.1.22 77676 2r6jA 318 84.14 2pk3A 321 84.37 1wlyA 333 85.35 3b89A 252 85.62 1vpdA 299 86.71 a.100.1.1,c.2.1.6 113951,113952 2ixaA 444 86.82 2pzmA 330 88.51 1i9gA 280 89.41 c.66.1.13 62090