# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3d2lA 243 1.595 3bxoA 239 2.178 2pbfA 227 2.952 3d64A 494 4.363 2v74B 346 5.251 1v8bA 479 5.914 c.2.1.4,c.23.12.3 113564,113565 1w24A 182 5.929 d.159.1.7 120579 3b3fA 341 5.975 1xvaA 292 7.006 c.66.1.5 34183 1yizA 429 7.035 c.67.1.1 123375 2axqA 467 7.066 1l1eA 287 7.560 c.66.1.18 73454 1im8A 244 8.447 c.66.1.14 66212 2qa1A 500 8.757 1gdeA 389 8.930 c.67.1.1 60456 2a22A 215 9.243 d.159.1.7 126025 1oc2A 348 9.906 c.2.1.2 92765 2p8jA 209 10.01 2douA 376 10.08 2fk8A 318 10.38 c.66.1.18 133648 1tw3A 360 10.65 a.4.5.29,c.66.1.12 107373,107374 1q1rA 431 10.68 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1xm7A 195 11.00 d.159.1.8 115473 1ve3A 227 11.29 c.66.1.43 120010 1y8qB 640 12.87 1qzzA 374 14.25 a.4.5.29,c.66.1.12 96719,96720 1x2gA 337 14.47 1yovA 537 14.60 c.111.1.2 123785 1wznA 252 15.02 c.66.1.43 121525 1fp1D 372 15.34 a.4.5.29,c.66.1.12 59939,59940 1ks9A 291 16.08 a.100.1.7,c.2.1.6 68857,68858 1d2fA 390 16.26 c.67.1.3 34411 1y8qA 346 16.53 2cvjA 180 16.62 2ahdA 165 17.97 d.159.1.7 126752 2ip2A 334 18.20 2po3A 424 18.43 1kjqA 391 19.63 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1n2eA 300 20.38 c.26.1.4 85268 1kpgA 287 22.08 c.66.1.18 68735 1zq9A 285 22.18 c.66.1.24 125505 2ogeA 399 22.22 1lhpA 312 22.43 c.72.1.5 77960 3bn1A 373 22.79 1t2aA 375 22.99 c.2.1.2 99078 1y8cA 246 23.60 c.66.1.43 116563 2fytA 340 23.76 c.66.1.6 134391 1li4A 432 23.92 c.2.1.4,c.23.12.3 84616,84617 3grsA 478 24.01 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2gqwA 408 24.48 3cgvA 397 26.65 2i6gA 199 26.85 c.66.1.44 137096 2yvlA 248 27.62 2pk3A 321 27.90 1npyA 271 28.07 c.2.1.7,c.58.1.5 85995,85996 2eklA 313 28.47 1uufA 369 28.81 b.35.1.2,c.2.1.1 100006,100007 1w7lA 422 29.11 c.67.1.1 109226 2bm8A 236 29.68 c.66.1.50 128771 3b46A 447 30.23 2fhpA 187 31.32 c.66.1.46 133495 1c7nA 399 31.59 c.67.1.3 34413 1j32A 388 31.99 c.67.1.1 77067 3c1oA 321 32.96 2esrA 177 32.99 c.66.1.46 132344 2bs3A 656 33.16 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1assA 159 33.17 c.8.5.2 30818 1o69A 394 33.68 c.67.1.4 92560 1f3lA 321 33.91 c.66.1.6 59630 1ykjA 394 34.06 3b8xA 390 34.31 2eq6A 464 34.40 2vouA 397 34.45 2o0rA 411 34.72 1c0pA 363 35.84 c.4.1.2,d.16.1.3 30647,37934 2r3sA 335 37.05 1m6iA 493 37.22 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2exxA 306 37.48 2v3aA 384 37.67 1a9xA 1058 37.96 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2gasA 307 38.29 2ejbA 189 38.37 3bcxA 437 39.16 2ggsA 273 39.60 2dbqA 334 40.48 1orrA 347 40.55 c.2.1.2 93460 2vq3A 215 40.81 2c29D 337 41.20 1x19A 359 42.31 1or8A 340 42.69 c.66.1.6 93451 1o4sA 389 42.95 c.67.1.1 86620 3grs 478 43.57 1z2wA 192 43.72 d.159.1.7 124390 2yxeA 215 44.24 1ub0A 258 45.71 c.72.1.2 88394 2hcyA 347 45.83 1kyqA 274 45.93 c.2.1.11,e.37.1.1 73281,73282 3ce9A 354 48.03 2yxdA 183 48.13 2gpyA 233 48.65 1dv1A 449 48.93 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1qp8A 303 49.60 c.2.1.4,c.23.12.1 30092,31352 1yqdA 366 49.81 1hyuA 521 50.05 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2cf5A 357 50.12 2nxcA 254 50.18 c.66.1.39 138739 2gb3A 409 50.30 c.67.1.1 134903 2c5aA 379 50.80 c.2.1.2 129894 1k0iA 394 51.80 c.3.1.2,d.16.1.2 67942,67943 1af7 274 52.02 1gdhA 320 52.93 c.2.1.4,c.23.12.1 30095,31355 1l7dA 384 53.34 c.2.1.4,c.23.12.2 77774,77775 1jxhA 288 54.43 c.72.1.2 67415 2a84A 300 54.65 c.26.1.4 126389 1v2dA 381 55.70 c.67.1.1 108281 2q4eA 362 55.86 2nacA 393 56.36 c.2.1.4,c.23.12.1 30088,31348 2c81A 418 56.49 2vcyA 344 56.91 1ff9A 450 57.02 c.2.1.3,d.81.1.2 30039,39954 1y1pA 342 57.07 c.2.1.2 122550 2qedA 258 57.11 2culA 232 57.43 c.3.1.7 130813 1c1dA 355 57.45 c.2.1.7,c.58.1.1 30270,33918 2b69A 343 57.47 c.2.1.2 127974 2dwcA 433 57.53 2bs2A 660 57.65 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2ozvA 260 57.73 1i1nA 226 57.87 c.66.1.7 71102 2g76A 335 58.52 1u08A 386 58.87 c.67.1.1 107543 1fp2A 352 58.99 a.4.5.29,c.66.1.12 59941,59942 2r9zA 463 59.25 2o8nA 265 60.25 1sb8A 352 60.59 c.2.1.2 105410 2gn4A 344 60.66 2r6jA 318 60.71 2eh6A 375 60.74 1u2zA 433 60.98 c.66.1.31 107626 1gmlA 178 61.05 c.8.5.2 70273 2bkaA 242 61.50 c.2.1.2 128666 1qh5A 260 62.30 d.157.1.2 42057 1z45A 699 62.50 b.30.5.4,c.2.1.2 124427,124428 1ri5A 298 62.91 c.66.1.34 97502 1drwA 273 62.96 c.2.1.3,d.81.1.3 30057,39972 1rkxA 357 63.27 c.2.1.2 97631 2fnuA 375 63.49 c.67.1.4 133831 1zq6A 359 63.66 1h6vA 499 63.76 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2dtxA 264 64.35 1af7A 274 64.79 a.58.1.1,c.66.1.8 17928,34203 2avnA 260 64.86 c.66.1.41 127380 1dliA 402 65.03 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1pbeA 394 65.78 c.3.1.2,d.16.1.2 30338,37869 2d59A 144 65.97 c.2.1.8 131266 2obwA 258 66.59 1drw 273 67.35 1fl2A 310 67.38 c.3.1.5,c.3.1.5 59869,59870 2zbwA 335 67.59 1dv2A 452 67.99 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2bllA 345 68.18 c.2.1.2 128733 2yy7A 312 68.46 1zsyA 357 70.14 1zk7A 467 71.33 2e18A 257 71.87 1uluA 261 71.92 c.2.1.2 113292 1td2A 287 71.98 c.72.1.5 106765 1b5pA 385 72.39 c.67.1.1 90403 2hmaA 376 73.01 1vefA 395 73.44 c.67.1.4 120018 2v6oA 596 73.48 1jg1A 235 73.49 c.66.1.7 66661 1p2hA 571 73.63 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2o3jA 481 74.03 1wwkA 307 74.70 2ax3A 502 75.58 c.72.1.4,c.104.1.1 127477,127478 1x13A 401 77.03 1bg6 359 77.43 1xm8A 254 77.83 d.157.1.2 115475 1bg6A 359 78.50 a.100.1.5,c.2.1.6 18810,30214 2goyA 275 78.66 1zmdA 474 79.00 1wvgA 359 80.93 c.2.1.2 121339 1jsxA 207 81.22 c.66.1.20 71846 2v7pA 310 81.69 1dl5A 317 82.08 c.66.1.7,d.197.1.1 64720,64721 1jf9A 408 82.90 c.67.1.3 62931 2eihA 343 82.94 2gmsA 390 83.29 2ih2A 421 83.43 1jvbA 347 83.67 b.35.1.2,c.2.1.1 77181,77182 1eny 268 83.78 1vloA 381 83.81 b.44.2.1,d.250.1.1 108838,108839 1jw9B 249 83.91 c.111.1.1 67377 2d1yA 256 83.94 c.2.1.2 131151 2glxA 332 84.25 1kolA 398 84.77 b.35.1.2,c.2.1.1 77474,77475 1yb5A 351 85.60 b.35.1.2,c.2.1.1 116601,116602 2gdzA 267 85.61 c.2.1.2 135043 1rkdA 309 86.10 c.72.1.1 34928 1qorA 327 86.14 b.35.1.2,c.2.1.1 24766,29782 1nytA 271 87.05 c.2.1.7,c.58.1.5 86417,86418 1ibjA 464 87.17 c.67.1.3 62162 3bkwA 243 87.18 2p5yA 311 87.52 1mo9A 523 88.92 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343