Best Alignments for T0471

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2b69A/T0471-2b69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b69A/T0471-2b69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9721e-034.73e-20 c.2.1.2
3cggA/T0471-3cggA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cggA/T0471-3cggA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3735e-033.58e-23
2avnA/T0471-2avnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2avnA/T0471-2avnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3066e-022.60e-17 c.66.1.41
1ve3A/T0471-1ve3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ve3A/T0471-1ve3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5428e-026.86e-23 c.66.1.43
3d2lA/T0471-3d2lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3d2lA/T0471-3d2lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6131e-021.90e-23
2yxeA/T0471-2yxeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yxeA/T0471-2yxeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4148e-022.31e-17
1l1eA/T0471-1l1eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l1eA/T0471-1l1eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6516e-022.57e-18 c.66.1.18
1lc5A/T0471-1lc5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lc5A/T0471-1lc5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1258e-021.09e-17 c.67.1.1
2ywlA/T0471-2ywlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ywlA/T0471-2ywlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6381e-023.21e-17
1pjqA/T0471-1pjqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pjqA/T0471-1pjqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7643e-022.28e-21 c.2.1.11
c.90.1.1
e.37.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001