Best Alignments for T0471

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2b69A/T0471-2b69A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b69A/T0471-2b69A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2564e-037.23e-20 c.2.1.2
2yxeA/T0471-2yxeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yxeA/T0471-2yxeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0026e-022.31e-17
1l1eA/T0471-1l1eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l1eA/T0471-1l1eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6766e-023.89e-14 c.66.1.18
3cggA/T0471-3cggA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cggA/T0471-3cggA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9163e-023.14e-17
2avnA/T0471-2avnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2avnA/T0471-2avnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.8525e-023.64e-15 c.66.1.41
1iukA/T0471-1iukA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iukA/T0471-1iukA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0196e-012.61e-14 c.2.1.8
1jg1A/T0471-1jg1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jg1A/T0471-1jg1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4180e-011.17e-13 c.66.1.7
1zq9A/T0471-1zq9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zq9A/T0471-1zq9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5260e-011.34e-16 c.66.1.24
1ve3A/T0471-1ve3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ve3A/T0471-1ve3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6203e-013.75e-18 c.66.1.43
1zx0A/T0471-1zx0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zx0A/T0471-1zx0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6246e-011.93e-10 c.66.1.16

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001