Best Alignments for T0471

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
3cggA/T0471-3cggA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cggA/T0471-3cggA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2657e-033.58e-23
2avnA/T0471-2avnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2avnA/T0471-2avnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0181e-032.60e-17 c.66.1.41
2b69A/T0471-2b69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b69A/T0471-2b69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2040e-034.73e-20 c.2.1.2
3d2lA/T0471-3d2lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3d2lA/T0471-3d2lA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5216e-031.90e-23
1ve3A/T0471-1ve3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ve3A/T0471-1ve3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6391e-036.86e-23 c.66.1.43
1q1rA/T0471-1q1rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q1rA/T0471-1q1rA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1659e-028.09e-21 c.3.1.5
c.3.1.5
d.87.1.1
2ywlA/T0471-2ywlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ywlA/T0471-2ywlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3513e-023.21e-17
2cvjA/T0471-2cvjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cvjA/T0471-2cvjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6797e-022.69e-17
2yxeA/T0471-2yxeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yxeA/T0471-2yxeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0434e-023.85e-16
1x19A/T0471-1x19A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x19A/T0471-1x19A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5087e-022.74e-16

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001