# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g1uA 155 1.250 1lssA 140 1.820 c.2.1.9 74246 3cggA 195 2.049 1ez1A 392 3.346 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1jq5A 370 3.472 e.22.1.2 67084 3c85A 183 5.274 2bzgA 232 6.049 c.66.1.36 129559 2hmvA 144 6.219 c.2.1.9 136615 2i6gA 199 6.543 c.66.1.44 137096 1nt2A 210 11.13 c.66.1.3 86149 1trb 320 14.94 1nhp 447 14.95 1vljA 407 14.98 e.22.1.2 108832 1kjqA 391 15.39 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1g8sA 230 15.90 c.66.1.3 90507 2q04A 211 16.92 1id1A 153 17.55 c.2.1.9 62286 1rrmA 386 17.68 e.22.1.2 105081 1pjzA 203 22.02 c.66.1.36 94794 1wqaA 455 22.23 1q1rA 431 22.99 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2yxdA 183 23.39 1o2dA 371 25.59 e.22.1.2 86591 2gqwA 408 26.03 1lsuA 147 27.43 c.2.1.9 74250 1zmdA 474 28.22 2nxcA 254 29.51 c.66.1.39 138739 2nyiA 195 29.57 2tmdA 729 30.38 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1fmjA 351 31.80 c.37.1.5 59879 2ywlA 180 32.02 2f7lA 455 34.08 2q0lA 311 35.70 1eyzA 392 37.78 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2ogyA 262 39.58 1d5tA 433 42.39 c.3.1.3,d.16.1.6 30422,37986 1gxjA 186 43.18 d.215.1.1 70707 3bofA 566 45.05 1n0wA 243 46.40 c.37.1.11 79772 1ad1A 266 47.20 c.1.21.1 29668 1dxyA 333 50.23 c.2.1.4,c.23.12.1 30094,31354 1wznA 252 50.87 c.66.1.43 121525 2nv0A 196 51.29 c.23.16.1 138625 2gdjA 264 54.01 c.37.1.11 135018 2ipxA 233 55.06 1lnqA 336 55.22 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1hyuA 521 56.25 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1mo9A 523 57.33 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1f6yA 262 58.21 c.1.21.2 29673 1d7yA 408 58.51 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1gesA 450 58.59 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1jg1A 235 58.72 c.66.1.7 66661 1ad4A 266 60.08 c.1.21.1 29670 2q02A 272 60.13 2ahuA 531 61.13 c.124.1.3,c.124.1.2 126785,126786 2i1qA 322 62.97 a.60.4.1,c.37.1.11 136984,136985 2ixdA 242 64.30 1eyeA 280 64.75 c.1.21.1 29672 2g72A 289 65.37 c.66.1.15 134724 1fbnA 230 65.71 c.66.1.3 34181 2gb4A 252 69.03 1xvaA 292 69.95 c.66.1.5 34183 2i62A 265 70.98 1oj7A 408 74.20 e.22.1.2 103971 1ht6A 405 75.36 b.71.1.1,c.1.8.1 83629,83630 3ladA 476 76.48 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1s3eA 520 79.47 c.3.1.2,d.16.1.5 98426,98427 2r9zA 463 80.79 2p8jA 209 81.67 1di6A 195 82.36 c.57.1.1 33863 1nhpA 447 84.92 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1xdiA 499 85.55 c.3.1.5,d.87.1.1 115160,115161 3grs 478 85.97 1qnrA 344 86.41 c.1.8.3 28834 2plwA 201 86.75 1gnd 447 86.98 1qhoA 686 89.60 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738