# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g1uA	155	2.016		
3cggA	195	2.095		
1ez1A	392	3.045	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
1jq5A	370	3.538	e.22.1.2	67084
1lssA	140	5.521	c.2.1.9	74246
1nt2A	210	8.252	c.66.1.3	86149
3c85A	183	9.542		
2i6gA	199	10.24	c.66.1.44	137096
2hmvA	144	13.66	c.2.1.9	136615
1kjqA	391	17.11	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1vljA	407	21.07	e.22.1.2	108832
1pjzA	203	22.80	c.66.1.36	94794
2bzgA	232	24.65	c.66.1.36	129559
1wqaA	455	28.55		
1eyzA	392	30.03	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1nhp	447	30.38		
2nxcA	254	32.61	c.66.1.39	138739
2gqwA	408	32.78		
1trb	320	32.97		
1rrmA	386	33.62	e.22.1.2	105081
1g8sA	230	34.27	c.66.1.3	90507
2ogyA	262	35.68		
1fmjA	351	35.69	c.37.1.5	59879
1n0wA	243	36.51	c.37.1.11	79772
2q04A	211	37.15		
1o2dA	371	37.96	e.22.1.2	86591
2nyiA	195	41.32		
1jg1A	235	43.52	c.66.1.7	66661
1f6yA	262	44.13	c.1.21.2	29673
3bofA	566	46.13		
2f7lA	455	48.37		
2q0lA	311	49.39		
1lnqA	336	52.55	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
2ixdA	242	52.91		
1oj7A	408	53.35	e.22.1.2	103971
1l1eA	287	53.84	c.66.1.18	73454
2yxdA	183	53.98		
1eyeA	280	56.29	c.1.21.1	29672
2nv0A	196	61.46	c.23.16.1	138625
2ywlA	180	62.19		
1fjgE	162	64.39	d.14.1.1,d.50.1.2	37553,38789
3bxoA	239	65.12		
1ad1A	266	65.60	c.1.21.1	29668
2q02A	272	68.17		
1lsuA	147	69.72	c.2.1.9	74250
1ht6A	405	69.78	b.71.1.1,c.1.8.1	83629,83630
2gdjA	264	71.55	c.37.1.11	135018
2i1qA	322	72.53	a.60.4.1,c.37.1.11	136984,136985
1q1rA	431	73.74	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1di6A	195	74.77	c.57.1.1	33863
2plwA	201	76.15		
1s3eA	520	77.86	c.3.1.2,d.16.1.5	98426,98427
1gxjA	186	78.24	d.215.1.1	70707
2g72A	289	78.62	c.66.1.15	134724
2ahuA	531	80.88	c.124.1.3,c.124.1.2	126785,126786
3cklA	298	80.92		
1dxyA	333	81.67	c.2.1.4,c.23.12.1	30094,31354
1a5lC	566	82.06	b.92.1.1,c.1.9.2	28426,29048
1xclA	235	84.17	c.66.1.16	115127
2i62A	265	86.13		
1xvaA	292	87.30	c.66.1.5	34183
1kpgA	287	89.07	c.66.1.18	68735