# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jq5A 370 1.214 e.22.1.2 67084 1lssA 140 1.742 c.2.1.9 74246 1ez1A 392 2.254 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 3c85A 183 2.332 2g1uA 155 2.678 3cggA 195 3.927 2i6gA 199 9.019 c.66.1.44 137096 2z3yA 662 10.13 1kjqA 391 12.87 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1vljA 407 13.42 e.22.1.2 108832 3bofA 566 14.66 1wqaA 455 15.24 2gqwA 408 17.49 1trb 320 17.62 1oj7A 408 17.63 e.22.1.2 103971 1eyzA 392 17.69 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2q0lA 311 18.94 1id1A 153 18.96 c.2.1.9 62286 1o2dA 371 19.76 e.22.1.2 86591 2nyiA 195 19.82 1q1rA 431 19.94 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1gxjA 186 20.03 d.215.1.1 70707 2q04A 211 20.31 2bzgA 232 20.49 c.66.1.36 129559 2nxcA 254 21.36 c.66.1.39 138739 1rrmA 386 21.77 e.22.1.2 105081 2f7lA 455 21.88 1eyeA 280 21.98 c.1.21.1 29672 1pjzA 203 23.25 c.66.1.36 94794 2ogyA 262 23.95 1ad4A 266 26.05 c.1.21.1 29670 2iidA 498 26.33 c.3.1.2,d.16.1.5 137426,137427 1lsuA 147 26.39 c.2.1.9 74250 1s3eA 520 28.67 c.3.1.2,d.16.1.5 98426,98427 1d7yA 408 29.15 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2hmvA 144 30.04 c.2.1.9 136615 1f6yA 262 31.46 c.1.21.2 29673 1ad1A 266 32.49 c.1.21.1 29668 1nhp 447 33.37 2ahuA 531 36.01 c.124.1.3,c.124.1.2 126785,126786 1ymqA 261 38.33 c.108.1.10 123707 1n0wA 243 40.83 c.37.1.11 79772 1jg1A 235 41.54 c.66.1.7 66661 2ywlA 180 41.98 1nt2A 210 42.00 c.66.1.3 86149 2r00A 336 42.74 1o5zA 442 43.39 c.59.1.2,c.72.2.2 92530,92531 1di6A 195 43.69 c.57.1.1 33863 1g8sA 230 44.24 c.66.1.3 90507 1zmdA 474 44.62 1d5tA 433 44.64 c.3.1.3,d.16.1.6 30422,37986 1nrwA 288 44.65 c.108.1.10 86128 2ixdA 242 47.57 1u8sA 192 47.84 d.58.18.5,d.58.18.5 107737,107738 2dplA 308 49.22 2b30A 301 49.74 c.108.1.10 127759 1tx2A 297 51.66 c.1.21.1 107420 1dxyA 333 54.39 c.2.1.4,c.23.12.1 30094,31354 2e7fA 262 56.50 2gdjA 264 60.97 c.37.1.11 135018 1lnqA 336 61.38 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1gxlA 213 62.24 d.215.1.1 70713 1gteA 1025 63.01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1reoA 486 63.09 c.3.1.2,d.16.1.5 97325,97326 2yxdA 183 64.62 2q02A 272 66.12 1efaA 333 66.60 a.35.1.5,c.93.1.1 17106,35691 2cukA 311 67.39 2hrdA 253 67.57 2dumA 170 69.46 1tqhA 247 70.40 c.69.1.29 107225 2nv0A 196 70.86 c.23.16.1 138625 1rd5A 262 71.29 c.1.2.4 111772 1l1eA 287 71.63 c.66.1.18 73454 1yloA 348 72.05 b.49.3.1,c.56.5.4 123659,123660 1h7wA 1025 74.74 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1y9wA 140 79.13 d.108.1.1 122783 1vpwA 340 80.00 a.35.1.5,c.93.1.1 17087,35680 2j6iA 364 80.47 1wznA 252 80.65 c.66.1.43 121525 1ff9A 450 81.62 c.2.1.3,d.81.1.2 30039,39954 1lk5A 229 81.70 c.124.1.4,d.58.40.1 73960,73961 2i1qA 322 83.49 a.60.4.1,c.37.1.11 136984,136985 2ohwA 133 83.84 1qopA 268 84.12 c.1.2.4 28570 2d0iA 333 84.28 2rbkA 261 84.96 1gqnA 252 85.51 c.1.10.1 90514 1ujpA 271 86.36 c.1.2.4 99462 2fssA 365 86.75 2cvhA 220 86.92 2jhfA 374 87.09 b.35.1.2,c.2.1.1 138314,138315 1d9eA 284 88.54 c.1.10.4 29195 1h1yA 228 89.84 c.1.2.2 76506