# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lssA	140	2.650	c.2.1.9	74246
2g1uA	155	3.191		
1jq5A	370	3.732	e.22.1.2	67084
1ez1A	392	3.882	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
3cggA	195	4.274		
2q04A	211	6.710		
2z3yA	662	10.21		
1trb	320	10.91		
2i6gA	199	12.02	c.66.1.44	137096
2bzgA	232	14.85	c.66.1.36	129559
3c85A	183	15.84		
1d5tA	433	17.04	c.3.1.3,d.16.1.6	30422,37986
1nt2A	210	18.56	c.66.1.3	86149
2nyiA	195	19.86		
1pjzA	203	21.04	c.66.1.36	94794
1kjqA	391	24.41	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2hmvA	144	25.15	c.2.1.9	136615
1gxjA	186	25.71	d.215.1.1	70707
2b30A	301	29.94	c.108.1.10	127759
2f7lA	455	30.82		
1lsuA	147	36.79	c.2.1.9	74250
1wqaA	455	39.24		
1vljA	407	40.86	e.22.1.2	108832
2gdjA	264	41.94	c.37.1.11	135018
2gb4A	252	42.01		
1id1A	153	43.42	c.2.1.9	62286
2nxcA	254	44.16	c.66.1.39	138739
1s3eA	520	45.92	c.3.1.2,d.16.1.5	98426,98427
1f6yA	262	46.51	c.1.21.2	29673
1fmjA	351	47.46	c.37.1.5	59879
1n0wA	243	48.54	c.37.1.11	79772
1wznA	252	52.26	c.66.1.43	121525
2iidA	498	53.44	c.3.1.2,d.16.1.5	137426,137427
1xzoA	174	55.53	c.47.1.10	122474
1u8sA	192	56.97	d.58.18.5,d.58.18.5	107737,107738
1eyeA	280	57.26	c.1.21.1	29672
2ywlA	180	59.01		
1eyzA	392	59.09	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1ad1A	266	62.62	c.1.21.1	29668
2q0lA	311	65.20		
1efaA	333	66.42	a.35.1.5,c.93.1.1	17106,35691
1xvaA	292	66.71	c.66.1.5	34183
1ymqA	261	68.24	c.108.1.10	123707
1ht6A	405	70.10	b.71.1.1,c.1.8.1	83629,83630
1ad4A	266	70.98	c.1.21.1	29670
2tmdA	729	73.85	c.1.4.1,c.3.1.1,c.4.1.1	28616,30317,30602
1o5zA	442	75.69	c.59.1.2,c.72.2.2	92530,92531
2i1qA	322	75.85	a.60.4.1,c.37.1.11	136984,136985
1d9eA	284	76.31	c.1.10.4	29195
2dr3A	247	76.91		
3bofA	566	78.71		
2ahuA	531	80.09	c.124.1.3,c.124.1.2	126785,126786
1zmdA	474	82.65		
1j5wA	298	84.95	d.104.1.1	71589
2gqwA	408	89.56