# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jq5A	370	2.231	e.22.1.2	67084
1lssA	140	2.736	c.2.1.9	74246
2g1uA	155	2.840		
1ez1A	392	3.823	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
3cggA	195	4.318		
2q04A	211	10.60		
1trb	320	11.68		
2z3yA	662	11.82		
2i6gA	199	13.68	c.66.1.44	137096
2bzgA	232	14.96	c.66.1.36	129559
1d5tA	433	16.19	c.3.1.3,d.16.1.6	30422,37986
3c85A	183	18.28		
2nyiA	195	20.30		
2hmvA	144	20.99	c.2.1.9	136615
1nt2A	210	21.39	c.66.1.3	86149
1kjqA	391	21.71	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2b30A	301	28.76	c.108.1.10	127759
2f7lA	455	29.13		
1wqaA	455	29.76		
1vljA	407	30.53	e.22.1.2	108832
2gdjA	264	31.04	c.37.1.11	135018
1pjzA	203	31.50	c.66.1.36	94794
1gxjA	186	36.01	d.215.1.1	70707
1fmjA	351	39.31	c.37.1.5	59879
1n0wA	243	40.12	c.37.1.11	79772
1oj7A	408	42.10	e.22.1.2	103971
1f6yA	262	44.37	c.1.21.2	29673
2tmdA	729	45.07	c.1.4.1,c.3.1.1,c.4.1.1	28616,30317,30602
1lsuA	147	46.86	c.2.1.9	74250
1xvaA	292	47.27	c.66.1.5	34183
2i1qA	322	49.25	a.60.4.1,c.37.1.11	136984,136985
2ywlA	180	51.68		
2nxcA	254	51.70	c.66.1.39	138739
1xzoA	174	51.93	c.47.1.10	122474
1wznA	252	52.53	c.66.1.43	121525
1ht6A	405	53.33	b.71.1.1,c.1.8.1	83629,83630
3bofA	566	53.70		
1eyzA	392	55.57	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1u8sA	192	57.40	d.58.18.5,d.58.18.5	107737,107738
2gqwA	408	58.31		
1s3eA	520	59.68	c.3.1.2,d.16.1.5	98426,98427
1zmdA	474	59.69		
1efaA	333	62.92	a.35.1.5,c.93.1.1	17106,35691
2gb4A	252	64.68		
2ahuA	531	65.26	c.124.1.3,c.124.1.2	126785,126786
1id1A	153	65.72	c.2.1.9	62286
1ymqA	261	66.66	c.108.1.10	123707
1q1rA	431	67.70	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
2dr3A	247	71.77		
2iidA	498	71.96	c.3.1.2,d.16.1.5	137426,137427
2q0lA	311	74.18		
1o2dA	371	74.41	e.22.1.2	86591
1eyeA	280	75.04	c.1.21.1	29672
1d9eA	284	78.35	c.1.10.4	29195
1ad1A	266	79.61	c.1.21.1	29668
2cvhA	220	81.06		
1o5zA	442	82.20	c.59.1.2,c.72.2.2	92530,92531
2ixdA	242	83.19		
1b74A	254	83.71	c.78.2.1,c.78.2.1	35264,35265
2yxdA	183	87.35		
1j5wA	298	89.57	d.104.1.1	71589