# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1lssA	140	2.543	c.2.1.9	74246
3cggA	195	2.731		
2g1uA	155	2.841		
1jq5A	370	2.865	e.22.1.2	67084
1ez1A	392	3.522	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
2q04A	211	8.599		
1trb	320	11.97		
2i6gA	199	12.25	c.66.1.44	137096
2bzgA	232	12.73	c.66.1.36	129559
2z3yA	662	13.09		
1d5tA	433	16.37	c.3.1.3,d.16.1.6	30422,37986
3c85A	183	16.88		
1nt2A	210	18.13	c.66.1.3	86149
1kjqA	391	18.79	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2hmvA	144	21.16	c.2.1.9	136615
2nyiA	195	23.44		
1pjzA	203	27.81	c.66.1.36	94794
1gxjA	186	31.61	d.215.1.1	70707
1wqaA	455	37.61		
1n0wA	243	38.18	c.37.1.11	79772
2b30A	301	38.89	c.108.1.10	127759
1f6yA	262	39.11	c.1.21.2	29673
2nxcA	254	39.44	c.66.1.39	138739
2f7lA	455	40.75		
1vljA	407	41.99	e.22.1.2	108832
1lsuA	147	42.07	c.2.1.9	74250
1xzoA	174	44.31	c.47.1.10	122474
2ywlA	180	44.70		
3bofA	566	46.49		
1eyeA	280	46.56	c.1.21.1	29672
2gdjA	264	47.44	c.37.1.11	135018
1j5wA	298	47.61	d.104.1.1	71589
1fmjA	351	47.75	c.37.1.5	59879
1efaA	333	48.10	a.35.1.5,c.93.1.1	17106,35691
1eyzA	392	50.43	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1id1A	153	50.96	c.2.1.9	62286
1xvaA	292	51.13	c.66.1.5	34183
2gb4A	252	52.28		
1wznA	252	53.83	c.66.1.43	121525
1d9eA	284	54.31	c.1.10.4	29195
1oj7A	408	56.14	e.22.1.2	103971
1s3eA	520	57.04	c.3.1.2,d.16.1.5	98426,98427
2dr3A	247	61.42		
1o2dA	371	61.84	e.22.1.2	86591
1o5zA	442	62.80	c.59.1.2,c.72.2.2	92530,92531
2tmdA	729	64.11	c.1.4.1,c.3.1.1,c.4.1.1	28616,30317,30602
2bg9E	370	67.72		
2ahuA	531	68.00	c.124.1.3,c.124.1.2	126785,126786
2yxdA	183	69.90		
1u8sA	192	71.28	d.58.18.5,d.58.18.5	107737,107738
1ad1A	266	71.80	c.1.21.1	29668
2i1qA	322	73.26	a.60.4.1,c.37.1.11	136984,136985
1zmdA	474	74.00		
1ht6A	405	77.10	b.71.1.1,c.1.8.1	83629,83630
2iidA	498	77.58	c.3.1.2,d.16.1.5	137426,137427
2q0lA	311	77.96		
2g72A	289	78.14	c.66.1.15	134724
1o7dA	298	79.99	c.6.2.1	86641
2cvhA	220	80.02		
2gqwA	408	81.24		
1rrmA	386	81.29	e.22.1.2	105081
1lnqA	336	81.60	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
1n2eA	300	83.40	c.26.1.4	85268
1q1rA	431	86.94	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1fjgE	162	87.11	d.14.1.1,d.50.1.2	37553,38789
2dumA	170	87.43		
2i4aA	107	88.07		
2oblA	347	89.80		
2ixdA	242	89.99