# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ez1A	392	1.065	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
1jq5A	370	2.481	e.22.1.2	67084
1kjqA	391	5.714	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1nt2A	210	5.748	c.66.1.3	86149
1lssA	140	6.408	c.2.1.9	74246
3c85A	183	6.476		
1pjzA	203	8.416	c.66.1.36	94794
1trb	320	9.067		
2pn1A	331	11.57		
1eyzA	392	13.38	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
2nyiA	195	13.86		
1id1A	153	17.18	c.2.1.9	62286
2hmvA	144	18.57	c.2.1.9	136615
2g1uA	155	21.96		
1n0wA	243	22.20	c.37.1.11	79772
1eyeA	280	25.63	c.1.21.1	29672
1vljA	407	26.40	e.22.1.2	108832
1xzoA	174	27.00	c.47.1.10	122474
1rrmA	386	27.76	e.22.1.2	105081
2q04A	211	28.88		
1lsuA	147	29.19	c.2.1.9	74250
2pk3A	321	29.68		
1q1rA	431	34.34	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1efaA	333	34.84	a.35.1.5,c.93.1.1	17106,35691
1d5tA	433	34.86	c.3.1.3,d.16.1.6	30422,37986
2dumA	170	35.69		
1o2dA	371	35.88	e.22.1.2	86591
1ad1A	266	36.44	c.1.21.1	29668
3cggA	195	36.55		
1ad4A	266	38.10	c.1.21.1	29670
3ce9A	354	38.85		
1xclA	235	38.99	c.66.1.16	115127
2ijzA	428	41.43		
2gdjA	264	42.61	c.37.1.11	135018
1g8sA	230	43.60	c.66.1.3	90507
2i1qA	322	43.62	a.60.4.1,c.37.1.11	136984,136985
3bxoA	239	43.86		
2bzgA	232	46.00	c.66.1.36	129559
2ahuA	531	46.87	c.124.1.3,c.124.1.2	126785,126786
1nhp	447	47.79		
1gxjA	186	48.63	d.215.1.1	70707
2dk8A	81	50.45		
2nv0A	196	51.97	c.23.16.1	138625
1b3rA	431	53.12	c.2.1.4,c.23.12.3	30106,31366
1jg1A	235	56.35	c.66.1.7	66661
1tqhA	247	58.32	c.69.1.29	107225
2ogyA	262	59.20		
1d7yA	408	59.48	c.3.1.5,c.3.1.5,d.87.1.1	30565,30566,40204
2ywlA	180	60.29		
2i6gA	199	62.02	c.66.1.44	137096
1di6A	195	62.38	c.57.1.1	33863
1y2qA	143	63.08		
1gv4A	528	63.71	c.3.1.5,c.3.1.5,d.87.1.1	70589,70590,70591
2i7gA	376	66.35		
1m6iA	493	68.84	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1dxyA	333	70.10	c.2.1.4,c.23.12.1	30094,31354
1xwfA	431	71.57	c.2.1.4,c.23.12.3	122392,122393
1hyuA	521	71.99	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
1jmvA	141	72.20	c.26.2.4	66897
1bif	469	73.11		
1th8B	116	73.30	c.13.2.1	106909
2gqwA	408	75.05		
2cukA	311	75.57		
1vc1A	110	78.23	c.13.2.1	108493
1yasA	257	81.81	c.69.1.20	34801
2cvhA	220	82.72		
2ixdA	242	85.85		
2obxA	157	87.85		
1f6yA	262	88.47	c.1.21.2	29673
1b74A	254	88.66	c.78.2.1,c.78.2.1	35264,35265
2ywjA	186	89.19