# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jq5A	370	2.707	e.22.1.2	67084
2g1uA	155	2.919		
1lssA	140	3.027	c.2.1.9	74246
1ez1A	392	3.927	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
2i6gA	199	8.958	c.66.1.44	137096
3c85A	183	9.597		
2hmvA	144	14.13	c.2.1.9	136615
2nyiA	195	16.47		
1id1A	153	16.96	c.2.1.9	62286
2bzgA	232	18.20	c.66.1.36	129559
2z3yA	662	20.52		
1vljA	407	24.07	e.22.1.2	108832
1lsuA	147	25.54	c.2.1.9	74250
2q04A	211	26.83		
2yxdA	183	27.28		
1trb	320	27.60		
1o2dA	371	27.66	e.22.1.2	86591
2ywlA	180	28.71		
1kjqA	391	29.19	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
3cggA	195	29.68		
1jg1A	235	31.29	c.66.1.7	66661
1d5tA	433	31.84	c.3.1.3,d.16.1.6	30422,37986
2nxcA	254	37.13	c.66.1.39	138739
2nv0A	196	37.48	c.23.16.1	138625
1eyzA	392	37.66	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1wqaA	455	39.70		
2pn1A	331	40.59		
1nt2A	210	45.14	c.66.1.3	86149
2ahuA	531	49.61	c.124.1.3,c.124.1.2	126785,126786
1fmjA	351	53.36	c.37.1.5	59879
1u8sA	192	56.88	d.58.18.5,d.58.18.5	107737,107738
1nhp	447	58.16		
1pjzA	203	59.88	c.66.1.36	94794
1gxjA	186	61.82	d.215.1.1	70707
1rrmA	386	62.06	e.22.1.2	105081
2q02A	272	62.92		
2tmdA	729	63.03	c.1.4.1,c.3.1.1,c.4.1.1	28616,30317,30602
1xzoA	174	64.64	c.47.1.10	122474
1nrwA	288	67.09	c.108.1.10	86128
1wznA	252	67.59	c.66.1.43	121525
2ixdA	242	71.84		
1s3eA	520	73.22	c.3.1.2,d.16.1.5	98426,98427
2hf2A	283	74.66		
1efaA	333	76.69	a.35.1.5,c.93.1.1	17106,35691
1oj7A	408	78.07	e.22.1.2	103971
1y9wA	140	78.64	d.108.1.1	122783
2f7lA	455	80.87		
2ywjA	186	82.21		
1q1rA	431	82.55	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
3bofA	566	83.36		
2gqwA	408	84.16