# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cggA 195 0.03786 1cxlA 686 0.1731 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1ez1A 392 0.3600 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 3c85A 183 0.3690 2g1uA 155 0.7636 1kjqA 391 0.7790 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1id1A 153 1.146 c.2.1.9 62286 1lssA 140 1.263 c.2.1.9 74246 1gteA 1025 1.790 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2bzgA 232 3.069 c.66.1.36 129559 1itcA 516 3.159 b.3.1.1,c.1.8.1 83705,83706 1eyzA 392 3.203 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2b30A 301 4.602 c.108.1.10 127759 2pn1A 331 5.368 2i6gA 199 5.456 c.66.1.44 137096 2avnA 260 5.771 c.66.1.41 127380 1hjsA 332 6.007 c.1.8.3 83492 2gqwA 408 6.500 1eyeA 280 6.647 c.1.21.1 29672 1pamA 686 6.858 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 3bmvA 683 7.037 2yxdA 183 7.606 2hmvA 144 7.896 c.2.1.9 136615 1gnd 447 8.970 1wqaA 455 9.144 1ot1A 686 10.53 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1ad1A 266 10.89 c.1.21.1 29668 1oj7A 408 11.56 e.22.1.2 103971 1p0kA 349 12.36 c.1.4.1 87648 1reoA 486 12.65 c.3.1.2,d.16.1.5 97325,97326 1q1rA 431 13.96 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2jhfA 374 14.23 b.35.1.2,c.2.1.1 138314,138315 2nxcA 254 14.80 c.66.1.39 138739 2bg9E 370 15.60 1ht6A 405 15.83 b.71.1.1,c.1.8.1 83629,83630 1rrmA 386 15.91 e.22.1.2 105081 1efaA 333 15.92 a.35.1.5,c.93.1.1 17106,35691 1iomA 377 17.45 a.103.1.1 83698 2iidA 498 17.66 c.3.1.2,d.16.1.5 137426,137427 1nhp 447 18.79 2nyiA 195 19.53 1a5lC 566 19.61 b.92.1.1,c.1.9.2 28426,29048 1ivnA 190 20.69 c.23.10.5 83719 1wznA 252 21.43 c.66.1.43 121525 3bblA 287 22.60 2e7fA 262 23.32 1eg5A 384 23.43 c.67.1.3 34429 2gb4A 252 23.73 1d5tA 433 23.75 c.3.1.3,d.16.1.6 30422,37986 2dr3A 247 23.94 2g72A 289 23.96 c.66.1.15 134724 2fuvA 549 24.40 1w78A 422 24.54 2obfA 289 24.65 2ahuA 531 25.09 c.124.1.3,c.124.1.2 126785,126786 1xovA 326 25.54 b.34.11.4,c.56.5.6 122206,122207 3cu0A 281 25.98 1ur4A 399 26.12 c.1.8.3 113402 1jg1A 235 26.86 c.66.1.7 66661 2nv0A 196 28.30 c.23.16.1 138625 1sw2A 275 28.59 c.94.1.1 106064 1d3cA 686 29.24 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1iugA 352 30.69 c.67.1.3 90699 1ps9A 671 31.38 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2dc1A 236 31.86 2o57A 297 33.53 2c0hA 353 33.91 c.1.8.3 129594 1u8sA 192 34.60 d.58.18.5,d.58.18.5 107737,107738 3d1cA 369 35.35 2ismA 352 35.49 2z8fA 412 37.25 1fobA 334 37.79 c.1.8.3 83255 1m32A 366 37.92 c.67.1.3 78508 1mo9A 523 39.32 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2ajrA 331 39.37 c.72.1.1 126892 3bwyA 214 39.56 1h7wA 1025 39.63 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1eq2A 310 40.17 c.2.1.2 29814 2guyA 478 40.23 b.71.1.1,c.1.8.1 135754,135755 1lk5A 229 40.46 c.124.1.4,d.58.40.1 73960,73961 2c92A 160 42.76 3b50A 310 43.33 1gq2A 555 44.75 c.2.1.7,c.58.1.3 70308,70309 1trb 320 45.20 2fpqA 444 45.39 2puzA 419 45.95 2fyfA 398 46.85 2jbrA 422 47.55 1ad4A 266 47.76 c.1.21.1 29670 2avdA 219 48.71 c.66.1.1 127377 3c24A 286 49.36 2j4hA 193 50.50 2hnkA 239 51.06 1y9aA 360 52.67 2dumA 170 53.32 1n2eA 300 53.83 c.26.1.4 85268 1y8cA 246 54.47 c.66.1.43 116563 1im8A 244 55.21 c.66.1.14 66212 1f82A 424 56.21 d.92.1.7 40307 2reeA 224 56.57 1ve3A 227 58.09 c.66.1.43 120010 1qnrA 344 59.65 c.1.8.3 28834 1dxeA 256 60.45 c.1.12.5 29310 1cjcA 460 61.02 c.3.1.1,c.4.1.1 30319,30604 1l2uA 245 61.22 c.1.2.3 73516 2py6A 409 61.95 1xbtA 193 62.82 c.37.1.24,g.39.1.14 115080,115081 2dkaA 544 63.10 2ae8A 221 63.40 d.14.1.9,d.14.1.9 126604,126605 2h1rA 299 63.66 1vljA 407 65.12 e.22.1.2 108832 1kpgA 287 65.28 c.66.1.18 68735 1fc4A 401 66.20 c.67.1.4 59760 1xngA 268 66.36 c.26.2.1 122186 1xvaA 292 66.50 c.66.1.5 34183 2q04A 211 68.65 1fjgE 162 68.88 d.14.1.1,d.50.1.2 37553,38789 1gqnA 252 68.93 c.1.10.1 90514 1vluA 468 70.31 c.82.1.1 108864 1u0tA 307 70.64 e.52.1.1 107567 1hrdA 449 70.75 c.2.1.7,c.58.1.1 30219,33867 1v98A 140 71.15 1k0fA 277 72.71 c.92.2.2 71974 1b74A 254 75.75 c.78.2.1,c.78.2.1 35264,35265 1lnqA 336 75.92 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 2dr1A 386 77.43 1dtyA 429 77.68 c.67.1.4 34495 1g8aA 227 78.51 c.66.1.3 90506 1chd 203 78.62 1p5dX 463 79.24 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1zkdA 387 79.77 c.66.1.52 125184 1dn1A 594 80.23 e.25.1.1 43357 1di0A 158 81.32 c.16.1.1 30957 2cb0A 333 81.80 1o2dA 371 83.09 e.22.1.2 86591 2ywjA 186 83.61 1a88A 275 83.81 c.69.1.12 34707 1eu8A 409 84.11 c.94.1.1 59502 1fp2A 352 84.48 a.4.5.29,c.66.1.12 59941,59942 2pqmA 343 84.92 1qfeA 252 85.15 c.1.10.1 29167 2qt3A 403 85.36 1h1dA 221 85.99 c.66.1.1 83452 1f47B 144 86.56 d.129.4.1 59645 2nwdX 130 86.77 d.2.1.2 138718 1d9eA 284 86.82 c.1.10.4 29195 2ze0A 555 87.00 2g8sA 353 88.44 2ghsA 326 88.60 b.68.6.1 135209 1fecA 490 89.13 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176