# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ez1A	392	2.192	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
2g1uA	155	2.427		
1jq5A	370	3.081	e.22.1.2	67084
1lssA	140	3.596	c.2.1.9	74246
3c85A	183	7.514		
2i6gA	199	8.044	c.66.1.44	137096
3cggA	195	8.315		
2hmvA	144	12.42	c.2.1.9	136615
1id1A	153	13.54	c.2.1.9	62286
2bzgA	232	14.46	c.66.1.36	129559
1trb	320	16.57		
2pn1A	331	16.69		
2yxdA	183	17.39		
2z3yA	662	20.47		
1kjqA	391	21.62	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1vljA	407	21.66	e.22.1.2	108832
2nyiA	195	22.03		
1eyzA	392	23.72	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
2ywlA	180	24.43		
1o2dA	371	25.45	e.22.1.2	86591
1lsuA	147	29.27	c.2.1.9	74250
1nt2A	210	30.12	c.66.1.3	86149
1d5tA	433	32.45	c.3.1.3,d.16.1.6	30422,37986
2nxcA	254	33.21	c.66.1.39	138739
3bofA	566	34.79		
2nv0A	196	35.34	c.23.16.1	138625
1jg1A	235	36.90	c.66.1.7	66661
2tmdA	729	38.69	c.1.4.1,c.3.1.1,c.4.1.1	28616,30317,30602
2q02A	272	41.98		
1wznA	252	45.68	c.66.1.43	121525
1wqaA	455	48.13		
2ahuA	531	51.06	c.124.1.3,c.124.1.2	126785,126786
2ixdA	242	51.89		
1oj7A	408	52.19	e.22.1.2	103971
2q04A	211	53.07		
1nhp	447	57.12		
1u8sA	192	57.64	d.58.18.5,d.58.18.5	107737,107738
1pjzA	203	57.81	c.66.1.36	94794
1fmjA	351	59.69	c.37.1.5	59879
1rrmA	386	62.07	e.22.1.2	105081
1n0wA	243	62.53	c.37.1.11	79772
2f7lA	455	64.49		
2gqwA	408	67.87		
1gxjA	186	69.29	d.215.1.1	70707
2ogyA	262	70.63		
1di6A	195	70.83	c.57.1.1	33863
1g8sA	230	73.23	c.66.1.3	90507
1efaA	333	73.90	a.35.1.5,c.93.1.1	17106,35691
2h1rA	299	76.70		
1xzoA	174	78.85	c.47.1.10	122474
1mo9A	523	80.01	c.3.1.5,c.3.1.5,d.87.1.1	79341,79342,79343
1q1rA	431	80.08	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1ad1A	266	82.42	c.1.21.1	29668
2jhfA	374	85.23	b.35.1.2,c.2.1.1	138314,138315
2q0lA	311	85.54		
1qfeA	252	85.70	c.1.10.1	29167
1ad4A	266	86.04	c.1.21.1	29670
1y9wA	140	89.65	d.108.1.1	122783