# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g1uA	155	4.506		
1jq5A	370	6.998	e.22.1.2	67084
1ez1A	392	8.294	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
1lssA	140	8.859	c.2.1.9	74246
2i6gA	199	10.27	c.66.1.44	137096
3cggA	195	10.31		
1nt2A	210	13.54	c.66.1.3	86149
2q04A	211	21.52		
2bzgA	232	28.17	c.66.1.36	129559
2nyiA	195	31.06		
3c85A	183	31.28		
1d5tA	433	32.36	c.3.1.3,d.16.1.6	30422,37986
1trb	320	36.00		
2hmvA	144	36.84	c.2.1.9	136615
2z3yA	662	37.89		
3bofA	566	43.82		
2ogyA	262	48.17		
1o2dA	371	50.39	e.22.1.2	86591
2b30A	301	53.83	c.108.1.10	127759
1n0wA	243	57.82	c.37.1.11	79772
1pjzA	203	60.89	c.66.1.36	94794
1fmjA	351	64.88	c.37.1.5	59879
1o5zA	442	64.92	c.59.1.2,c.72.2.2	92530,92531
1vljA	407	66.04	e.22.1.2	108832
1wqaA	455	66.36		
1kjqA	391	66.41	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1f6yA	262	70.03	c.1.21.2	29673
1a5lC	566	70.59	b.92.1.1,c.1.9.2	28426,29048
2nxcA	254	74.11	c.66.1.39	138739
2yxdA	183	76.64		
2q0lA	311	77.77		
1s3eA	520	78.71	c.3.1.2,d.16.1.5	98426,98427
1gxjA	186	82.59	d.215.1.1	70707
2gdjA	264	83.59	c.37.1.11	135018
1fjgE	162	84.63	d.14.1.1,d.50.1.2	37553,38789
1gnd	447	86.17		
1wznA	252	88.05	c.66.1.43	121525