# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ez1A	392	5.737	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
1jq5A	370	6.163	e.22.1.2	67084
2g1uA	155	7.911		
1lssA	140	8.023	c.2.1.9	74246
2i6gA	199	9.214	c.66.1.44	137096
2q04A	211	14.60		
2nyiA	195	17.33		
3cggA	195	18.37		
1nt2A	210	20.42	c.66.1.3	86149
2z3yA	662	25.59		
2bzgA	232	28.60	c.66.1.36	129559
1trb	320	29.65		
3c85A	183	32.43		
1n0wA	243	37.15	c.37.1.11	79772
2b30A	301	42.27	c.108.1.10	127759
1fmjA	351	45.10	c.37.1.5	59879
2q0lA	311	45.30		
1f6yA	262	50.39	c.1.21.2	29673
1vljA	407	51.07	e.22.1.2	108832
1kjqA	391	52.59	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
3bofA	566	55.47		
1o2dA	371	56.11	e.22.1.2	86591
1lsuA	147	57.05	c.2.1.9	74250
2nv0A	196	58.87	c.23.16.1	138625
1o7dA	298	59.78	c.6.2.1	86641
2gdjA	264	60.52	c.37.1.11	135018
1wqaA	455	60.67		
1gxjA	186	60.94	d.215.1.1	70707
1d5tA	433	62.05	c.3.1.3,d.16.1.6	30422,37986
1eyeA	280	62.35	c.1.21.1	29672
2q02A	272	62.39		
1u8sA	192	66.79	d.58.18.5,d.58.18.5	107737,107738
2ahuA	531	68.28	c.124.1.3,c.124.1.2	126785,126786
2f7lA	455	69.04		
1jg1A	235	71.73	c.66.1.7	66661
1rrmA	386	72.08	e.22.1.2	105081
2nxcA	254	73.77	c.66.1.39	138739
1s3eA	520	76.17	c.3.1.2,d.16.1.5	98426,98427
1eyzA	392	77.33	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
2ogyA	262	78.51		
2hmvA	144	80.60	c.2.1.9	136615
1wznA	252	81.65	c.66.1.43	121525
1fjgE	162	85.57	d.14.1.1,d.50.1.2	37553,38789
1di6A	195	87.88	c.57.1.1	33863