# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g1uA	155	3.219		
3cggA	195	3.287		
1lssA	140	3.345	c.2.1.9	74246
1jq5A	370	5.153	e.22.1.2	67084
2i6gA	199	6.528	c.66.1.44	137096
2q04A	211	7.317		
1ez1A	392	10.52	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
1trb	320	14.55		
2bzgA	232	16.75	c.66.1.36	129559
2nyiA	195	19.09		
1nt2A	210	24.41	c.66.1.3	86149
3c85A	183	29.77		
3bofA	566	30.76		
2z3yA	662	31.65		
1n0wA	243	33.30	c.37.1.11	79772
2ogyA	262	34.75		
1d5tA	433	35.47	c.3.1.3,d.16.1.6	30422,37986
1lsuA	147	36.98	c.2.1.9	74250
1f6yA	262	38.31	c.1.21.2	29673
1fmjA	351	41.19	c.37.1.5	59879
2q0lA	311	41.34		
1wqaA	455	42.00		
2b30A	301	42.71	c.108.1.10	127759
2nxcA	254	42.84	c.66.1.39	138739
2hmvA	144	44.97	c.2.1.9	136615
2nv0A	196	49.77	c.23.16.1	138625
2ahuA	531	51.20	c.124.1.3,c.124.1.2	126785,126786
2gdjA	264	52.89	c.37.1.11	135018
2f7lA	455	54.98		
1pjzA	203	56.10	c.66.1.36	94794
1vljA	407	58.95	e.22.1.2	108832
1gxjA	186	62.95	d.215.1.1	70707
1gnd	447	65.27		
1s3eA	520	66.31	c.3.1.2,d.16.1.5	98426,98427
1fjgE	162	67.14	d.14.1.1,d.50.1.2	37553,38789
1lnqA	336	67.73	c.2.1.9,d.286.1.1,f.14.1.1	111576,111577,74050
2oblA	347	68.41		
2gqwA	408	69.91		
1ad4A	266	70.31	c.1.21.1	29670
1nrwA	288	71.49	c.108.1.10	86128
2i1qA	322	72.00	a.60.4.1,c.37.1.11	136984,136985
1ymqA	261	73.62	c.108.1.10	123707
1dxyA	333	74.85	c.2.1.4,c.23.12.1	30094,31354
1ad1A	266	76.98	c.1.21.1	29668
1xzoA	174	79.08	c.47.1.10	122474
1g8sA	230	79.35	c.66.1.3	90507
1tqhA	247	82.86	c.69.1.29	107225
1wznA	252	83.30	c.66.1.43	121525
1u2eA	289	86.70