# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ez1A 392 0.4525 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1pjzA 203 0.9750 c.66.1.36 94794 2pn1A 331 1.312 1eyeA 280 1.353 c.1.21.1 29672 2g1uA 155 1.959 1kjqA 391 2.220 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1ad1A 266 2.571 c.1.21.1 29668 1eyzA 392 3.183 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1lssA 140 3.234 c.2.1.9 74246 2bzgA 232 3.288 c.66.1.36 129559 3bxoA 239 4.658 1id1A 153 4.988 c.2.1.9 62286 1b3rA 431 5.378 c.2.1.4,c.23.12.3 30106,31366 3c85A 183 5.674 2ogyA 262 6.298 1jq5A 370 7.090 e.22.1.2 67084 2ex4A 241 9.560 c.66.1.42 132516 1rrmA 386 11.22 e.22.1.2 105081 1f6yA 262 11.58 c.1.21.2 29673 1kpgA 287 12.01 c.66.1.18 68735 2e7fA 262 12.45 2gb4A 252 12.70 1dxyA 333 12.71 c.2.1.4,c.23.12.1 30094,31354 1fp2A 352 14.58 a.4.5.29,c.66.1.12 59941,59942 2hmvA 144 16.12 c.2.1.9 136615 3cggA 195 17.13 1vljA 407 19.69 e.22.1.2 108832 1l1eA 287 19.96 c.66.1.18 73454 1nt2A 210 21.25 c.66.1.3 86149 2q04A 211 22.28 2j6iA 364 23.52 1trb 320 24.23 2cukA 311 24.78 1d4fA 431 25.32 c.2.1.4,c.23.12.3 30110,31370 1gv4A 528 26.16 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1wwkA 307 26.30 1o2dA 371 26.49 e.22.1.2 86591 2pptA 155 27.11 2gcgA 330 28.91 1mx3A 347 28.97 c.2.1.4,c.23.12.1 79638,79639 1ad4A 266 29.79 c.1.21.1 29670 2fssA 365 30.87 2pk3A 321 31.32 1lsuA 147 32.04 c.2.1.9 74250 1z7bA 358 32.60 c.2.1.2 124599 1q1rA 431 32.88 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1dv1A 449 33.25 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2dbqA 334 34.16 1g8sA 230 37.37 c.66.1.3 90507 2cvhA 220 38.10 1nrwA 288 39.54 c.108.1.10 86128 2gdjA 264 40.02 c.37.1.11 135018 2g76A 335 40.66 3bwyA 214 41.78 2i6gA 199 43.13 c.66.1.44 137096 2eklA 313 43.60 1bif 469 44.68 1m6iA 493 45.11 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2gn4A 344 46.79 1qzzA 374 47.65 a.4.5.29,c.66.1.12 96719,96720 1xwfA 431 48.10 c.2.1.4,c.23.12.3 122392,122393 1n0wA 243 49.11 c.37.1.11 79772 1di6A 195 49.17 c.57.1.1 33863 1k6xA 352 49.79 c.2.1.2 68238 2nwhA 317 50.61 1v8bA 479 50.69 c.2.1.4,c.23.12.3 113564,113565 1tqhA 247 51.08 c.69.1.29 107225 2d0iA 333 51.94 2f62A 161 52.47 c.23.14.1 133021 1jg1A 235 53.42 c.66.1.7 66661 1xdwA 331 55.28 1dxy 333 55.94 3d64A 494 57.26 2yxdA 183 57.59 2pi1A 334 58.00 1jmvA 141 58.28 c.26.2.4 66897 2pzmA 330 58.40 2dldA 337 58.94 c.2.1.4,c.23.12.1 30099,31359 1dv2A 452 59.83 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1z82A 335 60.03 1d7yA 408 61.91 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1fmjA 351 62.14 c.37.1.5 59879 2q02A 272 63.13 2c5aA 379 63.52 c.2.1.2 129894 1zx0A 236 63.69 c.66.1.16 125757 2ixdA 242 64.94 2ywlA 180 65.17 2dwcA 433 65.53 1trbA 320 66.20 c.3.1.5,c.3.1.5 30529,30530 1xbyA 216 66.89 c.1.2.3 121846 1lnqA 336 66.99 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1brt 277 67.62 1ir6A 424 68.92 c.107.1.2 71342 2i1qA 322 72.07 a.60.4.1,c.37.1.11 136984,136985 2oblA 347 72.59 1fpxA 352 74.16 a.4.5.29,c.66.1.12 59950,59951 1pjcA 361 76.45 c.2.1.4,c.23.12.2 30101,31361 2gqwA 408 77.77 2qfmA 364 80.83 2vdwA 302 82.87 1ordA 730 83.10 c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1ygyA 529 83.44 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1nhp 447 83.82 2v03A 303 84.26 1qp8A 303 85.41 c.2.1.4,c.23.12.1 30092,31352 1cj3A 392 85.49 c.3.1.2,d.16.1.2 30347,37878 2i0fA 157 86.93 3c6kA 381 87.87 1va4A 279 89.02 c.69.1.12 108458 2p5yA 311 89.77