# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjzA 203 0.5470 c.66.1.36 94794 2bzgA 232 0.8852 c.66.1.36 129559 1ez1A 392 0.9054 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1ad1A 266 1.110 c.1.21.1 29668 1jq5A 370 1.826 e.22.1.2 67084 2pn1A 331 2.025 2ogyA 262 2.927 1eyeA 280 3.053 c.1.21.1 29672 3c85A 183 3.085 2g1uA 155 4.205 1b3rA 431 4.263 c.2.1.4,c.23.12.3 30106,31366 1lssA 140 4.460 c.2.1.9 74246 3cggA 195 4.782 3bofA 566 5.260 1kjqA 391 5.716 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2gb4A 252 7.340 2e7fA 262 7.490 1ad4A 266 7.495 c.1.21.1 29670 1nt2A 210 7.722 c.66.1.3 86149 1f6yA 262 7.955 c.1.21.2 29673 1wznA 252 9.400 c.66.1.43 121525 1o2dA 371 9.435 e.22.1.2 86591 3bxoA 239 11.22 1rrmA 386 12.34 e.22.1.2 105081 1l1eA 287 12.50 c.66.1.18 73454 1eyzA 392 13.07 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2p8jA 209 13.93 1id1A 153 13.96 c.2.1.9 62286 1vljA 407 14.36 e.22.1.2 108832 1fp2A 352 14.76 a.4.5.29,c.66.1.12 59941,59942 2q04A 211 18.18 2yxdA 183 21.56 2hmvA 144 21.59 c.2.1.9 136615 1z82A 335 22.01 1g8sA 230 22.97 c.66.1.3 90507 1kpgA 287 23.79 c.66.1.18 68735 1nhp 447 24.30 1trb 320 26.31 3c24A 286 26.50 1n0wA 243 27.14 c.37.1.11 79772 1dxyA 333 29.43 c.2.1.4,c.23.12.1 30094,31354 2ipxA 233 30.63 2i1qA 322 35.16 a.60.4.1,c.37.1.11 136984,136985 1lnqA 336 36.22 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1zmdA 474 37.89 2ex4A 241 40.67 c.66.1.42 132516 2ywlA 180 41.68 1fpxA 352 43.99 a.4.5.29,c.66.1.12 59950,59951 1di6A 195 47.58 c.57.1.1 33863 1dv1A 449 48.59 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1w4xA 542 49.39 c.3.1.5,c.3.1.5 109171,109172 2z3yA 662 50.66 2gdjA 264 50.91 c.37.1.11 135018 1gv4A 528 52.40 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2f7lA 455 58.16 1qzzA 374 58.76 a.4.5.29,c.66.1.12 96719,96720 2gcgA 330 58.97 1xwfA 431 59.21 c.2.1.4,c.23.12.3 122392,122393 2ixdA 242 61.00 2i7gA 376 61.06 1s3eA 520 61.80 c.3.1.2,d.16.1.5 98426,98427 2cvhA 220 62.48 1m6iA 493 63.58 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2dldA 337 63.82 c.2.1.4,c.23.12.1 30099,31359 1trbA 320 66.86 c.3.1.5,c.3.1.5 30529,30530 3cc8A 230 67.63 1v8bA 479 69.14 c.2.1.4,c.23.12.3 113564,113565 1u94A 356 69.81 c.37.1.11,d.48.1.1 107743,107744 2dqwA 294 70.21 1bif 469 70.59 1lehA 364 71.26 c.2.1.7,c.58.1.1 30268,33916 1wqaA 455 71.40 1bw9A 356 71.81 c.2.1.7,c.58.1.1 30274,33922 1wwkA 307 72.54 1kevA 351 72.63 b.35.1.2,c.2.1.1 24749,29765 1dv2A 452 72.66 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1tuoA 464 73.27 1xdwA 331 73.40 1e1aA 314 74.86 b.68.6.1 59155 1cjcA 460 75.47 c.3.1.1,c.4.1.1 30319,30604 2yqzA 263 76.31 2rebA 352 78.27 c.37.1.11,d.48.1.1 32282,38767 2nxcA 254 79.70 c.66.1.39 138739 2i6gA 199 80.55 c.66.1.44 137096 2nwhA 317 80.98 1c1dA 355 81.73 c.2.1.7,c.58.1.1 30270,33918 1d4fA 431 83.63 c.2.1.4,c.23.12.3 30110,31370 3bwyA 214 83.65 1xclA 235 84.98 c.66.1.16 115127 1fmjA 351 85.07 c.37.1.5 59879 1dxy 333 85.57 1c0pA 363 86.34 c.4.1.2,d.16.1.3 30647,37934 2pptA 155 87.02 3d64A 494 88.37 1jg1A 235 88.88 c.66.1.7 66661 1xbyA 216 89.12 c.1.2.3 121846