# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xm8A 254 1.430 d.157.1.2 115475 2c5aA 379 1.940 c.2.1.2 129894 1pjqA 457 2.958 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1z7bA 358 4.627 c.2.1.2 124599 1yizA 429 4.629 c.67.1.1 123375 2exxA 306 4.818 2cukA 311 5.433 2a22A 215 5.597 d.159.1.7 126025 1oc2A 348 5.619 c.2.1.2 92765 1k6xA 352 5.730 c.2.1.2 68238 1qh5A 260 6.329 d.157.1.2 42057 1gdeA 389 7.143 c.67.1.1 60456 1sb8A 352 8.240 c.2.1.2 105410 2bllA 345 8.818 c.2.1.2 128733 1d2fA 390 8.898 c.67.1.3 34411 1qycA 308 9.376 c.2.1.2 96581 2obwA 258 9.802 2ywlA 180 10.29 2c29D 337 10.35 2qa1A 500 12.38 1u9jA 358 12.49 c.2.1.2 113243 1c7nA 399 12.96 c.67.1.3 34413 2axqA 467 13.16 1w24A 182 13.38 d.159.1.7 120579 1uxjA 309 13.70 c.2.1.5,d.162.1.1 108112,108113 2qedA 258 13.92 1d4fA 431 13.94 c.2.1.4,c.23.12.3 30110,31370 1r6dA 337 13.96 c.2.1.2 97148 2z1mA 345 14.26 1wwkA 307 14.26 2cvjA 180 14.45 1ks9A 291 14.71 a.100.1.7,c.2.1.6 68857,68858 1pjzA 203 15.04 c.66.1.36 94794 1xm7A 195 15.24 d.159.1.8 115473 1q1rA 431 16.00 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2p5yA 311 16.04 2gasA 307 16.68 1ez4A 318 16.87 c.2.1.5,d.162.1.1 64917,64918 3d64A 494 17.44 3b46A 447 18.17 1y8qA 346 18.24 1ur5A 309 18.38 c.2.1.5,d.162.1.1 99807,99808 1he2A 206 18.49 c.2.1.2 60966 1w7lA 422 18.99 c.67.1.1 109226 1bg6 359 20.31 1ldnA 316 20.39 c.2.1.5,d.162.1.1 30166,42133 3grs 478 20.80 1rkxA 357 21.17 c.2.1.2 97631 2ggsA 273 21.50 1j32A 388 22.11 c.67.1.1 77067 1qydA 313 22.35 c.2.1.2 96583 2douA 376 22.99 2pk3A 321 23.15 3cggA 195 23.33 2avnA 260 23.89 c.66.1.41 127380 2dbqA 334 24.50 2dc1A 236 24.51 1ff9A 450 25.54 c.2.1.3,d.81.1.2 30039,39954 1qp8A 303 25.65 c.2.1.4,c.23.12.1 30092,31352 2gn4A 344 25.73 1pbe 394 25.86 1smlA 269 26.67 d.157.1.1 42053 1dv1A 449 26.78 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1k0iA 394 27.46 c.3.1.2,d.16.1.2 67942,67943 1hdoA 206 27.72 c.2.1.2 60965 2q46A 253 28.40 c.2.1.2 139825 1v2dA 381 28.48 c.67.1.1 108281 3cgvA 397 29.43 2aefA 234 29.78 1hyhA 309 29.93 c.2.1.5,d.162.1.1 30150,42117 9ldtA 332 30.39 c.2.1.5,d.162.1.1 30154,42121 1lvl 458 30.56 1orrA 347 30.93 c.2.1.2 93460 2p97A 201 31.31 1lnqA 336 31.51 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1lldA 319 31.52 c.2.1.5,d.162.1.1 30177,42144 2zcuA 286 32.03 1ir6A 424 32.20 c.107.1.2 71342 2eklA 313 32.42 2ewdA 317 32.98 1rpnA 335 33.05 c.2.1.2 97708 3grsA 478 34.27 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1xgkA 352 34.54 c.2.1.2 115286 2bkaA 242 36.31 c.2.1.2 128666 1wznA 252 37.34 c.66.1.43 121525 1t2dA 322 37.44 c.2.1.5,d.162.1.1 99084,99085 1y8qB 640 37.56 2gcgA 330 38.76 1dv2A 452 39.99 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2gb3A 409 40.73 c.67.1.1 134903 2gqwA 408 41.74 1d7yA 408 41.88 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1ceqA 316 42.37 c.2.1.5,d.162.1.1 30163,42130 2vptA 215 42.57 1udcA 338 42.76 c.2.1.2 29785 1bw9A 356 43.20 c.2.1.7,c.58.1.1 30274,33922 2a35A 215 43.36 c.2.1.2 126072 1b5pA 385 43.76 c.67.1.1 90403 2nadA 393 44.23 c.2.1.4,c.23.12.1 30090,31350 1dctA 324 44.90 c.66.1.26 34244 1bjwA 382 45.06 c.67.1.1 34349 2b69A 343 45.16 c.2.1.2 127974 2nxcA 254 46.23 c.66.1.39 138739 2v7pA 310 47.19 2ogeA 399 47.34 2p4hX 322 47.57 1a5zA 319 47.86 c.2.1.5,d.162.1.1 30181,42148 1guzA 310 48.08 c.2.1.5,d.162.1.1 65586,65587 1dxyA 333 48.53 c.2.1.4,c.23.12.1 30094,31354 1v1aA 309 48.64 c.72.1.1 100249 1cj3A 392 48.89 c.3.1.2,d.16.1.2 30347,37878 2ip2A 334 48.95 1lvlA 458 49.12 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1v8bA 479 49.74 c.2.1.4,c.23.12.3 113564,113565 3c1oA 321 51.83 1yqzA 438 51.95 1bncA 449 52.14 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 1vm6A 228 52.48 d.81.1.3,c.2.1.3 108877,118631 2ag5A 246 52.93 c.2.1.2 126719 1l1eA 287 53.80 c.66.1.18 73454 1bg6A 359 55.38 a.100.1.5,c.2.1.6 18810,30214 1fl2A 310 56.74 c.3.1.5,c.3.1.5 59869,59870 2c81A 418 56.82 1ve3A 227 56.97 c.66.1.43 120010 2q1sA 377 57.01 1b9hA 388 57.32 c.67.1.4 34488 2r6jA 318 57.92 1xq6A 253 58.48 c.2.1.2 115829 3bn1A 373 59.16 1trb 320 60.25 2po3A 424 61.08 1pbeA 394 62.36 c.3.1.2,d.16.1.2 30338,37869 1id1A 153 62.40 c.2.1.9 62286 2i6tA 303 63.21 1zkpA 268 64.19 d.157.1.9 125205 1n2eA 300 64.69 c.26.1.4 85268 1lssA 140 65.02 c.2.1.9 74246 1yb4A 295 65.37 1xdiA 499 65.99 c.3.1.5,d.87.1.1 115160,115161 1ykjA 394 66.18 1c0pA 363 66.40 c.4.1.2,d.16.1.3 30647,37934 2q09A 416 67.15 2d59A 144 67.60 c.2.1.8 131266 2ax3A 502 69.44 c.72.1.4,c.104.1.1 127477,127478 2fk8A 318 70.30 c.66.1.18 133648 2glxA 332 70.52 6ldhA 329 73.18 c.2.1.5,d.162.1.1 30161,42128 1txgA 335 73.51 a.100.1.6,c.2.1.6 112775,112776 2hufA 393 73.55 1bw0A 416 73.80 c.67.1.1 34385 1pzgA 331 76.26 c.2.1.5,d.162.1.1 95425,95426 1xel 338 76.96 1z45A 699 77.00 b.30.5.4,c.2.1.2 124427,124428 3ceaA 346 77.15 1zmdA 474 77.50 1cydA 244 77.67 c.2.1.2 29825 2cmdA 312 77.84 c.2.1.5,d.162.1.1 30135,42102 1lehA 364 78.15 c.2.1.7,c.58.1.1 30268,33916 1zq9A 285 78.39 c.66.1.24 125505 1trbA 320 78.41 c.3.1.5,c.3.1.5 30529,30530 2yxdA 183 78.45 2cmd 312 79.01 3d2lA 243 79.75 1z2wA 192 80.02 d.159.1.7 124390 1meoA 209 82.38 c.65.1.1 79035 1m7yA 435 83.03 c.67.1.4 78761 1bwsA 321 83.34 c.2.1.2 29812 1c1dA 355 84.61 c.2.1.7,c.58.1.1 30270,33918 1a7aA 432 85.63 c.2.1.4,c.23.12.3 30104,31364 1f3lA 321 86.16 c.66.1.6 59630 1v8fA 276 86.50 c.26.1.4 100503 1vjoA 393 86.72 c.67.1.3 100827 1nhp 447 87.02 1ewxA 146 87.49 c.47.1.10 33062 1l7dA 384 88.33 c.2.1.4,c.23.12.2 77774,77775 2aioA 269 88.76 d.157.1.1 126829 1g8aA 227 89.26 c.66.1.3 90506 1xvaA 292 89.60 c.66.1.5 34183 1ebdA 455 89.90 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210