Best Alignments for T0471

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1fp1D	1.5328e-01	1fp1D/T0471-1fp1D-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.29 c.66.1.12
1qzzA	4.8366e-01	1qzzA/T0471-1qzzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.29 c.66.1.12
1fp2A	5.5568e-01	1fp2A/T0471-1fp2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.29 c.66.1.12
1im8A	8.1114e-01	1im8A/T0471-1im8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.14
1ve3A	8.2232e-01	1ve3A/T0471-1ve3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.43
2p8jA	8.8095e-01	2p8jA/T0471-2p8jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ip2A	9.6066e-01	2ip2A/T0471-2ip2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r3sA	1.0626e+00	2r3sA/T0471-2r3sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1tw3A	1.1607e+00	1tw3A/T0471-1tw3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.29 c.66.1.12
2nxcA	1.7792e+00	2nxcA/T0471-2nxcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.39
3d2lA	1.9226e+00	3d2lA/T0471-3d2lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1x19A	2.1717e+00	1x19A/T0471-1x19A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fk8A	2.2223e+00	2fk8A/T0471-2fk8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.18
2pxxA	2.4353e+00	2pxxA/T0471-2pxxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kpgA	2.6497e+00	1kpgA/T0471-1kpgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.18
1l1eA	3.0221e+00	1l1eA/T0471-1l1eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.18
1kyzA	3.3583e+00	1kyzA/T0471-1kyzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.29 c.66.1.12
2avnA	3.3632e+00	2avnA/T0471-2avnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.41
2hmvA	3.7875e+00	2hmvA/T0471-2hmvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.9
3cc8A	3.9957e+00	3cc8A/T0471-3cc8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001