# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fp1D 372 1.026 a.4.5.29,c.66.1.12 59939,59940 2p8jA 209 1.457 1fp2A 352 1.516 a.4.5.29,c.66.1.12 59941,59942 2r3sA 335 1.801 1tw3A 360 1.920 a.4.5.29,c.66.1.12 107373,107374 1qzzA 374 1.936 a.4.5.29,c.66.1.12 96719,96720 1ve3A 227 2.007 c.66.1.43 120010 2nxcA 254 2.437 c.66.1.39 138739 1im8A 244 3.091 c.66.1.14 66212 2hmvA 144 3.532 c.2.1.9 136615 2pxxA 215 3.597 3bxoA 239 3.647 2ip2A 334 3.910 1id1A 153 4.470 c.2.1.9 62286 2pbfA 227 4.942 1x19A 359 5.191 3c85A 183 5.716 1lsuA 147 6.284 c.2.1.9 74250 3d2lA 243 6.609 1lssA 140 6.653 c.2.1.9 74246 1l1eA 287 6.763 c.66.1.18 73454 2fk8A 318 7.079 c.66.1.18 133648 1kyzA 365 7.340 a.4.5.29,c.66.1.12 73312,73313 3cc8A 230 8.422 2avnA 260 9.755 c.66.1.41 127380 2p7iA 250 10.09 1q1rA 431 10.42 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3b3fA 341 11.35 2gpyA 233 11.51 2v74B 346 11.93 1zq9A 285 12.32 c.66.1.24 125505 1wznA 252 12.41 c.66.1.43 121525 2dwcA 433 12.76 2g1uA 155 12.79 2o57A 297 13.92 1x13A 401 14.38 1nhpA 447 15.01 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2axqA 467 15.09 2avdA 219 15.76 c.66.1.1 127377 1ks9A 291 16.38 a.100.1.7,c.2.1.6 68857,68858 1nhsA 447 16.52 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1kjqA 391 16.58 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1kpgA 287 16.72 c.66.1.18 68735 1y8cA 246 16.80 c.66.1.43 116563 2vdvE 246 16.94 1l7dA 384 18.45 c.2.1.4,c.23.12.2 77774,77775 2yvlA 248 18.65 2hmaA 376 18.74 1l3iA 192 19.00 c.66.1.22 77676 3bwyA 214 19.13 2i6gA 199 19.29 c.66.1.44 137096 2v3aA 384 19.56 2bm8A 236 20.04 c.66.1.50 128771 3bgvA 313 20.90 2cdcA 366 21.69 3bofA 566 21.84 2igtA 332 21.98 c.66.1.51 137401 1xtpA 254 22.04 c.66.1.42 116031 1ri5A 298 22.13 c.66.1.34 97502 2ffiA 288 22.33 c.1.9.15 133385 1xxlA 239 23.13 c.66.1.41 116203 1yqdA 366 23.59 1i1nA 226 23.65 c.66.1.7 71102 1qyrA 252 23.67 c.66.1.24 104657 1q7zA 566 23.73 c.1.21.2,c.1.26.1 96090,96091 2aefA 234 24.20 2pn1A 331 26.32 2ozvA 260 27.75 1j5xA 342 28.04 c.80.1.1 71591 1xvaA 292 28.39 c.66.1.5 34183 1f3lA 321 28.59 c.66.1.6 59630 3c3yA 237 29.05 1wy7A 207 29.53 c.66.1.32 121433 1kyqA 274 30.24 c.2.1.11,e.37.1.1 73281,73282 2gqwA 408 30.63 1pjcA 361 30.89 c.2.1.4,c.23.12.2 30101,31361 1ls6A 295 31.16 c.37.1.5 91115 1or8A 340 31.53 c.66.1.6 93451 2cduA 452 32.43 2frnA 278 32.79 c.66.1.47 133993 2gh1A 301 34.10 c.66.1.49 135170 1ne2A 200 34.73 c.66.1.32 85586 2fytA 340 35.48 c.66.1.6 134391 1yzhA 214 35.49 c.66.1.53 124277 2h00A 254 35.92 c.66.1.54 135925 1c1dA 355 36.32 c.2.1.7,c.58.1.1 30270,33918 2cl5A 221 37.01 c.66.1.1 130570 3cggA 195 40.30 2ew2A 316 40.81 1ni5A 433 40.82 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1rjdA 334 41.66 c.66.1.37 97558 1n0wA 243 42.08 c.37.1.11 79772 2as0A 396 42.39 b.122.1.9,c.66.1.51 127227,127228 2dc1A 236 43.34 2esrA 177 44.02 c.66.1.46 132344 2e7fA 262 44.03 1uirA 314 44.44 c.66.1.17 99429 1nv8A 284 44.81 c.66.1.30 86224 2b78A 385 45.16 b.122.1.9,c.66.1.51 128025,128026 2bg9E 370 45.34 2dplA 308 46.17 2yrxA 451 46.48 1vl5A 260 46.58 c.66.1.41 108720 1j99A 293 47.99 c.37.1.5 71618 1vimA 200 48.32 c.80.1.3 100758 1m6iA 493 48.44 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1fmjA 351 49.12 c.37.1.5 59879 2ex4A 241 50.71 c.66.1.42 132516 2fhpA 187 50.86 c.66.1.46 133495 2cf5A 357 50.87 1zrhA 274 52.79 1jg1A 235 54.60 c.66.1.7 66661 2r9zA 463 55.07 2bzgA 232 55.10 c.66.1.36 129559 2bg9A 370 56.64 1a9xA 1058 57.15 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2ogyA 262 59.22 3ladA 476 59.26 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1trbA 320 59.65 c.3.1.5,c.3.1.5 30529,30530 2fcaA 213 60.46 c.66.1.53 133262 2vojA 371 63.83 1mqsA 671 64.05 e.25.1.1 79414 1p91A 269 64.48 c.66.1.33 94378 1o54A 277 65.24 c.66.1.13 92482 2hp1A 432 66.74 1a53 247 67.69 1zx0A 236 68.26 c.66.1.16 125757 1uwvA 433 68.66 b.40.4.12,c.66.1.40 100128,100129 2ov8A 288 69.23 1xdzA 240 69.86 c.66.1.20 115196 1i4wA 353 73.63 c.66.1.24 66028 1dl5A 317 74.80 c.66.1.7,d.197.1.1 64720,64721 1trb 320 75.57 3pmgA 561 75.86 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1wxxA 382 76.40 b.122.1.9,c.66.1.51 121418,121419 1w78A 422 77.69 2hnkA 239 77.74 2gb4A 252 77.86 2ibtA 421 78.11 c.66.1.27,d.287.1.1 137205,137206 1kolA 398 79.12 b.35.1.2,c.2.1.1 77474,77475 2vduE 254 79.39 2amxA 376 80.06 c.1.9.1 127024 2yqzA 263 80.14 1h1dA 221 80.50 c.66.1.1 83452 2j5vA 367 82.15 1gsoA 431 82.73 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1lvlA 458 83.53 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1a0cA 438 84.45 c.1.15.3 29529 1hx0A 496 84.74 b.71.1.1,c.1.8.1 61346,61347 1d3cA 686 85.42 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1k1xA 659 87.20 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1f6yA 262 87.21 c.1.21.2 29673 2yw2A 424 87.72 1fl2A 310 88.39 c.3.1.5,c.3.1.5 59869,59870 1t8tA 271 89.54 c.37.1.5 106685 3bcxA 437 89.60 1zpvA 91 89.87 d.58.18.7 125475