# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c85A 183 0.4815 1lssA 140 1.147 c.2.1.9 74246 2hmvA 144 1.170 c.2.1.9 136615 1q1rA 431 1.229 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1lsuA 147 1.852 c.2.1.9 74250 2p8jA 209 1.863 2nxcA 254 2.412 c.66.1.39 138739 1im8A 244 3.224 c.66.1.14 66212 1ve3A 227 3.433 c.66.1.43 120010 1fp2A 352 3.565 a.4.5.29,c.66.1.12 59941,59942 2gqwA 408 3.862 1id1A 153 3.980 c.2.1.9 62286 2fk8A 318 4.085 c.66.1.18 133648 2aefA 234 4.238 1l1eA 287 4.241 c.66.1.18 73454 1kpgA 287 4.320 c.66.1.18 68735 2ip2A 334 4.327 1fp1D 372 4.511 a.4.5.29,c.66.1.12 59939,59940 2pxxA 215 4.525 3d2lA 243 4.930 2g1uA 155 5.006 1l7dA 384 5.168 c.2.1.4,c.23.12.2 77774,77775 1tw3A 360 5.315 a.4.5.29,c.66.1.12 107373,107374 2dwcA 433 5.552 2eihA 343 5.949 1jg1A 235 7.019 c.66.1.7 66661 2r3sA 335 7.655 3bofA 566 7.689 1nhpA 447 7.876 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1c1dA 355 7.882 c.2.1.7,c.58.1.1 30270,33918 2pbfA 227 8.212 2axqA 467 8.679 2e7fA 262 8.762 1qzzA 374 8.961 a.4.5.29,c.66.1.12 96719,96720 1nhsA 447 9.037 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1i1nA 226 9.135 c.66.1.7 71102 2v3aA 384 9.383 1yqdA 366 10.07 1kjqA 391 10.09 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1q7zA 566 10.67 c.1.21.2,c.1.26.1 96090,96091 2ogyA 262 10.79 1pjcA 361 11.84 c.2.1.4,c.23.12.2 30101,31361 2cdcA 366 11.84 1trb 320 12.50 3cggA 195 13.44 1m6iA 493 13.45 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1uufA 369 13.73 b.35.1.2,c.2.1.1 100006,100007 2avnA 260 13.76 c.66.1.41 127380 2cf5A 357 13.94 1j5xA 342 13.95 c.80.1.1 71591 1lvlA 458 14.02 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2r9zA 463 14.21 1trbA 320 14.38 c.3.1.5,c.3.1.5 30529,30530 1x13A 401 14.64 2cvjA 180 15.05 1kyqA 274 15.34 c.2.1.11,e.37.1.1 73281,73282 1lehA 364 15.51 c.2.1.7,c.58.1.1 30268,33916 2eq6A 464 15.86 1zpvA 91 16.36 d.58.18.7 125475 2bzgA 232 16.53 c.66.1.36 129559 1lluA 342 16.59 b.35.1.2,c.2.1.1 91064,91065 1f6yA 262 16.67 c.1.21.2 29673 1yqzA 438 16.89 2o57A 297 17.55 2vhxA 377 17.62 1p91A 269 18.29 c.66.1.33 94378 3cc8A 230 19.14 2i6gA 199 19.21 c.66.1.44 137096 3bxoA 239 19.31 1a53 247 19.64 1kyzA 365 19.80 a.4.5.29,c.66.1.12 73312,73313 2yquA 455 21.21 2pn1A 331 21.51 2dplA 308 22.41 3cvoA 202 22.49 2vojA 371 22.63 2ew2A 316 23.30 2gb4A 252 23.40 3grs 478 24.55 1wznA 252 24.55 c.66.1.43 121525 1pj5A 830 24.86 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2igtA 332 25.07 c.66.1.51 137401 2j5vA 367 25.08 1ls6A 295 26.54 c.37.1.5 91115 2cduA 452 26.77 2d8aA 348 27.43 3ladA 476 27.67 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1fl2A 310 27.86 c.3.1.5,c.3.1.5 59869,59870 1ks9A 291 29.90 a.100.1.7,c.2.1.6 68857,68858 1dl5A 317 30.13 c.66.1.7,d.197.1.1 64720,64721 1yrlA 491 31.76 2p7iA 250 31.99 2yvlA 248 32.21 2ywlA 180 32.27 1womA 271 32.31 1yzhA 214 33.33 c.66.1.53 124277 1xtpA 254 33.38 c.66.1.42 116031 2fcaA 213 34.71 c.66.1.53 133262 2h00A 254 35.01 c.66.1.54 135925 2d13A 227 35.53 c.26.2.1 131121 2dc1A 236 35.81 1rkqA 282 36.75 c.108.1.10 97621 1eyeA 280 37.09 c.1.21.1 29672 2b9wA 424 37.79 1a9xA 1058 38.31 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1wy7A 207 38.74 c.66.1.32 121433 1zq9A 285 38.83 c.66.1.24 125505 2bg9E 370 40.02 1y8cA 246 40.21 c.66.1.43 116563 2gpyA 233 40.62 3grsA 478 40.65 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1wy5A 317 41.37 c.26.2.5,d.229.1.1 121428,121429 1wqaA 455 41.50 1jq5A 370 42.12 e.22.1.2 67084 1uxoA 192 42.37 c.69.1.31 108121 1rjdA 334 42.83 c.66.1.37 97558 1wlyA 333 43.50 1ru8A 232 44.02 c.26.2.1 97849 2vdvE 246 44.68 2zbwA 335 45.61 1bg6 359 46.66 1vimA 200 46.73 c.80.1.3 100758 1yb5A 351 46.99 b.35.1.2,c.2.1.1 116601,116602 2ffiA 288 48.51 c.1.9.15 133385 2bg9A 370 48.52 2pujA 286 49.22 2ozvA 260 50.43 1xxlA 239 51.04 c.66.1.41 116203 3bwyA 214 51.08 1qorA 327 51.72 b.35.1.2,c.2.1.1 24766,29782 2hmaA 376 51.87 1y37A 304 52.36 2pocA 367 52.37 1x19A 359 52.66 1xdiA 499 52.94 c.3.1.5,d.87.1.1 115160,115161 2gh1A 301 53.37 c.66.1.49 135170 1o54A 277 54.20 c.66.1.13 92482 1xvaA 292 54.28 c.66.1.5 34183 1fmjA 351 55.03 c.37.1.5 59879 1i9gA 280 56.41 c.66.1.13 62090 1w78A 422 56.45 1uirA 314 56.74 c.66.1.17 99429 2dpoA 319 56.77 2r6oA 294 57.07 3bdiA 207 57.64 2yqzA 263 57.72 2q0lA 311 59.06 1qyrA 252 60.78 c.66.1.24 104657 1kolA 398 61.33 b.35.1.2,c.2.1.1 77474,77475 1cs0A 1073 61.53 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1ri5A 298 61.75 c.66.1.34 97502 2frnA 278 62.10 c.66.1.47 133993 2iuyA 342 62.17 1zrhA 274 64.06 2amxA 376 64.14 c.1.9.1 127024 1q0rA 298 64.24 c.69.1.28 95508 2cukA 311 64.90 2avdA 219 64.95 c.66.1.1 127377 2vduE 254 65.04 3bgvA 313 65.29 3bkwA 243 65.94 2r47A 157 66.34 1j99A 293 66.52 c.37.1.5 71618 1zejA 293 67.09 2a3nA 355 67.73 2ouiA 360 68.43 2vcyA 344 68.98 1y9aA 360 69.50 1evyA 366 69.50 a.100.1.6,c.2.1.6 18811,30215 2bm8A 236 70.44 c.66.1.50 128771 1u2eA 289 71.51 1vj0A 380 72.09 b.35.1.2,c.2.1.1 100786,100787 1u8sA 192 73.09 d.58.18.5,d.58.18.5 107737,107738 1zsyA 357 73.21 2vptA 215 74.08 1gesA 450 74.41 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1oj7A 408 75.37 e.22.1.2 103971 2esrA 177 78.37 c.66.1.46 132344 1y0pA 571 79.04 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1pl8A 356 79.05 b.35.1.2,c.2.1.1 94878,94879 1qamA 244 79.09 c.66.1.24 34220 1ni5A 433 79.29 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1bg4A 302 79.40 c.1.8.3 28806 1moqA 368 80.07 c.80.1.1 35302 2yxeA 215 80.77 1hyuA 521 80.86 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2v74B 346 81.20 3b3fA 341 82.35 2puhA 286 83.91 1jr2A 286 84.34 c.113.1.1 67111 1cvl 319 84.61 1n0wA 243 84.68 c.37.1.11 79772 1q77A 138 85.55 c.26.2.4 96023 1p5dX 463 88.13 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2b78A 385 88.45 b.122.1.9,c.66.1.51 128025,128026 1zmdA 474 88.52