# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p8jA 209 0.8564 3c85A 183 1.028 2hmvA 144 1.128 c.2.1.9 136615 2pxxA 215 1.278 1lssA 140 1.357 c.2.1.9 74246 1ve3A 227 1.534 c.66.1.43 120010 1id1A 153 1.872 c.2.1.9 62286 1im8A 244 1.997 c.66.1.14 66212 1fp2A 352 2.116 a.4.5.29,c.66.1.12 59941,59942 1lsuA 147 2.689 c.2.1.9 74250 3d2lA 243 2.713 1qzzA 374 2.927 a.4.5.29,c.66.1.12 96719,96720 1fp1D 372 3.000 a.4.5.29,c.66.1.12 59939,59940 1l1eA 287 3.572 c.66.1.18 73454 2fk8A 318 3.727 c.66.1.18 133648 2nxcA 254 4.823 c.66.1.39 138739 1kpgA 287 5.808 c.66.1.18 68735 2aefA 234 5.977 1q1rA 431 7.551 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2axqA 467 7.766 2g1uA 155 8.159 3cc8A 230 8.231 2avnA 260 9.625 c.66.1.41 127380 1kyzA 365 10.53 a.4.5.29,c.66.1.12 73312,73313 1uirA 314 10.56 c.66.1.17 99429 1x19A 359 10.73 1zq9A 285 12.72 c.66.1.24 125505 2pn1A 331 13.02 1y8cA 246 13.29 c.66.1.43 116563 2r3sA 335 13.71 2yrxA 451 14.34 2ip2A 334 14.81 2bg9E 370 14.93 2i6gA 199 15.67 c.66.1.44 137096 1x13A 401 15.88 2ffiA 288 16.13 c.1.9.15 133385 2r9zA 463 16.34 2e7fA 262 18.11 2dwcA 433 18.88 1tw3A 360 20.51 a.4.5.29,c.66.1.12 107373,107374 2v3aA 384 20.72 1wy7A 207 20.73 c.66.1.32 121433 1trb 320 21.33 1nhsA 447 21.38 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1k1xA 659 21.53 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1f6yA 262 22.35 c.1.21.2 29673 1qstA 160 22.97 d.108.1.1 40804 1nhpA 447 23.57 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1c1dA 355 25.74 c.2.1.7,c.58.1.1 30270,33918 1a53 247 26.11 1ri5A 298 26.56 c.66.1.34 97502 2bg9A 370 26.88 3bwyA 214 26.95 1yqdA 366 27.65 2ew2A 316 30.05 2cduA 452 30.29 2gqwA 408 30.77 1w78A 422 32.27 2fcaA 213 32.29 c.66.1.53 133262 2dplA 308 32.66 1ks9A 291 33.11 a.100.1.7,c.2.1.6 68857,68858 1kjqA 391 33.77 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2ogyA 262 33.92 2vhxA 377 34.46 1ls6A 295 34.58 c.37.1.5 91115 2vduE 254 35.25 2vdvE 246 35.67 1m6iA 493 35.80 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1l7dA 384 36.17 c.2.1.4,c.23.12.2 77774,77775 1zrhA 274 36.59 1yzhA 214 36.65 c.66.1.53 124277 2r6oA 294 36.80 1lehA 364 38.70 c.2.1.7,c.58.1.1 30268,33916 2cf5A 357 39.94 1j5xA 342 40.30 c.80.1.1 71591 1qyrA 252 46.30 c.66.1.24 104657 3bgvA 313 46.53 1pjcA 361 46.93 c.2.1.4,c.23.12.2 30101,31361 1fl2A 310 47.83 c.3.1.5,c.3.1.5 59869,59870 2j5vA 367 48.35 3bofA 566 48.76 1kyqA 274 50.85 c.2.1.11,e.37.1.1 73281,73282 2o57A 297 52.29 1zx0A 236 52.93 c.66.1.16 125757 1pj5A 830 53.56 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2cvjA 180 53.70 2fhpA 187 54.21 c.66.1.46 133495 1lvlA 458 54.35 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2b9wA 424 54.47 3cggA 195 55.73 1xxlA 239 56.16 c.66.1.41 116203 3grs 478 56.88 1vimA 200 58.35 c.80.1.3 100758 2yqzA 263 59.50 1zpvA 91 59.55 d.58.18.7 125475 2bzgA 232 60.50 c.66.1.36 129559 1evyA 366 61.19 a.100.1.6,c.2.1.6 18811,30215 2pbfA 227 61.79 1trbA 320 61.95 c.3.1.5,c.3.1.5 30529,30530 1i1nA 226 62.23 c.66.1.7 71102 2cy8A 453 63.30 1q7zA 566 64.01 c.1.21.2,c.1.26.1 96090,96091 1wznA 252 64.18 c.66.1.43 121525 1xtpA 254 64.27 c.66.1.42 116031 1fmjA 351 64.81 c.37.1.5 59879 1qamA 244 65.82 c.66.1.24 34220 1j99A 293 68.17 c.37.1.5 71618 1jq5A 370 69.04 e.22.1.2 67084 2qh8A 302 69.10 1rjdA 334 70.33 c.66.1.37 97558 1mqsA 671 70.44 e.25.1.1 79414 3bdiA 207 70.99 1womA 271 72.28 2v74B 346 72.92 2ov8A 288 72.93 3bkwA 243 74.26 3b3fA 341 74.41 1xdiA 499 74.54 c.3.1.5,d.87.1.1 115160,115161 2vojA 371 75.51 1w4xA 542 75.66 c.3.1.5,c.3.1.5 109171,109172 2pujA 286 76.27 3ladA 476 76.73 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2i87A 364 77.22 1f3lA 321 79.76 c.66.1.6 59630 2vptA 215 80.15 1bg6 359 80.15 1yqzA 438 80.94 1n0wA 243 81.77 c.37.1.11 79772 2bi7A 384 82.07 2rebA 352 82.72 c.37.1.11,d.48.1.1 32282,38767 2pqmA 343 83.11 2o95A 187 83.91 1d5tA 433 85.59 c.3.1.3,d.16.1.6 30422,37986 1zejA 293 86.42 1uufA 369 87.27 b.35.1.2,c.2.1.1 100006,100007 1y0pA 571 87.85 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1ne2A 200 88.26 c.66.1.32 85586 2frnA 278 88.88 c.66.1.47 133993 2dc1A 236 89.20