# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1lssA 140 1.025 c.2.1.9 74246 2p8jA 209 1.267 1ve3A 227 1.301 c.66.1.43 120010 3c85A 183 1.509 2hmvA 144 1.652 c.2.1.9 136615 2pxxA 215 2.043 1id1A 153 2.064 c.2.1.9 62286 1fp2A 352 2.612 a.4.5.29,c.66.1.12 59941,59942 3d2lA 243 2.664 1im8A 244 3.212 c.66.1.14 66212 1qzzA 374 3.287 a.4.5.29,c.66.1.12 96719,96720 2nxcA 254 3.669 c.66.1.39 138739 1fp1D 372 3.871 a.4.5.29,c.66.1.12 59939,59940 1lsuA 147 3.921 c.2.1.9 74250 1l1eA 287 4.419 c.66.1.18 73454 2fk8A 318 4.604 c.66.1.18 133648 1q1rA 431 5.490 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2avnA 260 6.526 c.66.1.41 127380 2aefA 234 6.667 1kpgA 287 6.750 c.66.1.18 68735 2axqA 467 7.261 2g1uA 155 7.969 1uirA 314 8.860 c.66.1.17 99429 3cc8A 230 9.119 2r3sA 335 9.468 1zq9A 285 10.26 c.66.1.24 125505 2pn1A 331 12.16 1kyzA 365 12.33 a.4.5.29,c.66.1.12 73312,73313 1y8cA 246 12.85 c.66.1.43 116563 2ffiA 288 13.02 c.1.9.15 133385 1x19A 359 13.47 2ip2A 334 13.74 1x13A 401 13.91 2i6gA 199 14.10 c.66.1.44 137096 1ks9A 291 15.08 a.100.1.7,c.2.1.6 68857,68858 1tw3A 360 15.18 a.4.5.29,c.66.1.12 107373,107374 2e7fA 262 15.39 2ew2A 316 16.87 1wznA 252 16.89 c.66.1.43 121525 2yrxA 451 16.96 1f6yA 262 16.98 c.1.21.2 29673 2r9zA 463 17.73 1trb 320 17.83 2v3aA 384 18.43 3bwyA 214 18.88 1ri5A 298 19.20 c.66.1.34 97502 1k1xA 659 19.87 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1nhsA 447 19.89 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1nhpA 447 20.17 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 3bgvA 313 20.60 2bg9E 370 22.59 2cduA 452 23.84 2vdvE 246 23.98 1xtpA 254 24.10 c.66.1.42 116031 2ogyA 262 24.17 1j5xA 342 25.34 c.80.1.1 71591 1ls6A 295 25.57 c.37.1.5 91115 1a53 247 25.61 1w78A 422 26.11 1c1dA 355 26.74 c.2.1.7,c.58.1.1 30270,33918 2dwcA 433 27.34 1qyrA 252 27.70 c.66.1.24 104657 2fcaA 213 27.83 c.66.1.53 133262 2vhxA 377 28.86 1fl2A 310 29.65 c.3.1.5,c.3.1.5 59869,59870 2gqwA 408 32.31 2dplA 308 33.00 1l7dA 384 33.88 c.2.1.4,c.23.12.2 77774,77775 2vduE 254 33.97 1pjcA 361 34.11 c.2.1.4,c.23.12.2 30101,31361 1wy7A 207 34.15 c.66.1.32 121433 1yzhA 214 34.47 c.66.1.53 124277 1m6iA 493 34.91 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1yqdA 366 34.93 1lehA 364 35.56 c.2.1.7,c.58.1.1 30268,33916 1lvlA 458 36.41 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1zx0A 236 37.59 c.66.1.16 125757 2bzgA 232 37.70 c.66.1.36 129559 1kjqA 391 39.17 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1xvaA 292 40.21 c.66.1.5 34183 1zrhA 274 41.41 2fhpA 187 41.55 c.66.1.46 133495 1q7zA 566 41.88 c.1.21.2,c.1.26.1 96090,96091 1vimA 200 42.05 c.80.1.3 100758 2gpyA 233 42.33 2pbfA 227 42.56 1qstA 160 42.77 d.108.1.1 40804 3bkwA 243 43.41 2r6oA 294 43.76 3ladA 476 44.29 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2bg9A 370 44.39 1pj5A 830 44.82 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 3bofA 566 45.01 2o57A 297 45.26 2yqzA 263 45.43 1j99A 293 45.58 c.37.1.5 71618 1evyA 366 46.57 a.100.1.6,c.2.1.6 18811,30215 3cvoA 202 47.25 2igtA 332 48.80 c.66.1.51 137401 3grs 478 49.16 1fmjA 351 49.39 c.37.1.5 59879 2j5vA 367 50.59 1kyqA 274 51.65 c.2.1.11,e.37.1.1 73281,73282 2ov8A 288 53.49 1xdiA 499 54.27 c.3.1.5,d.87.1.1 115160,115161 1bg6 359 54.53 2cvjA 180 54.76 3cggA 195 55.22 2v74B 346 55.61 1xxlA 239 55.76 c.66.1.41 116203 1zejA 293 55.80 1f3lA 321 56.28 c.66.1.6 59630 1trbA 320 56.78 c.3.1.5,c.3.1.5 30529,30530 1i1nA 226 57.27 c.66.1.7 71102 1jq5A 370 57.79 e.22.1.2 67084 2cf5A 357 58.36 1mqsA 671 58.36 e.25.1.1 79414 1qamA 244 59.04 c.66.1.24 34220 2vojA 371 60.02 2b9wA 424 61.03 2ex4A 241 63.92 c.66.1.42 132516 2b78A 385 65.33 b.122.1.9,c.66.1.51 128025,128026 1y8qA 346 65.51 2qh8A 302 65.68 1ne2A 200 66.52 c.66.1.32 85586 2cy8A 453 66.96 1n0wA 243 67.22 c.37.1.11 79772 1h1dA 221 69.45 c.66.1.1 83452 2pujA 286 70.19 2avdA 219 70.40 c.66.1.1 127377 2pqmA 343 71.10 1uwvA 433 72.70 b.40.4.12,c.66.1.40 100128,100129 1jeoA 180 72.90 c.80.1.3 66611 2dc1A 236 72.93 2esrA 177 73.01 c.66.1.46 132344 2bm8A 236 73.59 c.66.1.50 128771 2yw2A 424 74.00 1yqzA 438 74.75 1rjdA 334 75.27 c.66.1.37 97558 2ozvA 260 75.59 1gsoA 431 75.76 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 3grsA 478 76.13 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2h00A 254 76.28 c.66.1.54 135925 2bi7A 384 76.70 1gesA 450 76.78 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1lluA 342 76.85 b.35.1.2,c.2.1.1 91064,91065 1zpvA 91 77.35 d.58.18.7 125475 2hnkA 239 77.89 2dpoA 319 78.02 3b3fA 341 78.85 1or8A 340 79.65 c.66.1.6 93451 2rebA 352 80.48 c.37.1.11,d.48.1.1 32282,38767 2yxdA 183 82.32 2fytA 340 82.70 c.66.1.6 134391 1m3sA 186 86.16 c.80.1.3 78573 2cl5A 221 86.21 c.66.1.1 130570 3dfr 162 86.42 2hmaA 376 86.48 2i87A 364 86.80 1womA 271 88.91 1epuA 591 89.62 e.25.1.1 43358