# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1lssA 140 1.191 c.2.1.9 74246 2p8jA 209 1.298 1ve3A 227 1.715 c.66.1.43 120010 2hmvA 144 1.719 c.2.1.9 136615 3c85A 183 1.777 2pxxA 215 1.858 1id1A 153 2.194 c.2.1.9 62286 1im8A 244 2.399 c.66.1.14 66212 1fp2A 352 2.554 a.4.5.29,c.66.1.12 59941,59942 3d2lA 243 2.907 1fp1D 372 3.661 a.4.5.29,c.66.1.12 59939,59940 1qzzA 374 3.702 a.4.5.29,c.66.1.12 96719,96720 1l1eA 287 4.312 c.66.1.18 73454 1lsuA 147 4.373 c.2.1.9 74250 2fk8A 318 5.136 c.66.1.18 133648 2nxcA 254 6.731 c.66.1.39 138739 1q1rA 431 6.857 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1kpgA 287 7.053 c.66.1.18 68735 2axqA 467 7.499 2aefA 234 7.871 2g1uA 155 8.225 3cc8A 230 8.454 1uirA 314 9.540 c.66.1.17 99429 2avnA 260 9.662 c.66.1.41 127380 1x13A 401 11.12 1x19A 359 14.00 2ffiA 288 14.66 c.1.9.15 133385 2ip2A 334 15.24 2r3sA 335 15.42 1zq9A 285 15.59 c.66.1.24 125505 2pn1A 331 15.70 2e7fA 262 16.78 1y8cA 246 17.26 c.66.1.43 116563 2i6gA 199 18.02 c.66.1.44 137096 2bg9E 370 18.88 2yrxA 451 19.00 1kyzA 365 19.21 a.4.5.29,c.66.1.12 73312,73313 1nhsA 447 19.61 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2dwcA 433 19.73 2r9zA 463 20.25 1nhpA 447 21.87 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1trb 320 23.15 1k1xA 659 23.36 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2v3aA 384 23.70 2cduA 452 24.02 1f6yA 262 24.21 c.1.21.2 29673 1a53 247 24.35 1ks9A 291 25.14 a.100.1.7,c.2.1.6 68857,68858 2fcaA 213 25.56 c.66.1.53 133262 3bwyA 214 28.10 2vhxA 377 28.24 2vdvE 246 28.45 2ew2A 316 28.59 1yzhA 214 28.89 c.66.1.53 124277 1c1dA 355 28.94 c.2.1.7,c.58.1.1 30270,33918 1ri5A 298 30.22 c.66.1.34 97502 1yqdA 366 30.35 2vduE 254 31.17 1w78A 422 31.70 1lehA 364 32.32 c.2.1.7,c.58.1.1 30268,33916 1l7dA 384 32.57 c.2.1.4,c.23.12.2 77774,77775 1qyrA 252 33.86 c.66.1.24 104657 1fl2A 310 34.08 c.3.1.5,c.3.1.5 59869,59870 1wy7A 207 34.27 c.66.1.32 121433 2ogyA 262 34.29 1tw3A 360 35.36 a.4.5.29,c.66.1.12 107373,107374 2cf5A 357 36.53 1j5xA 342 37.81 c.80.1.1 71591 1kjqA 391 38.12 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1i1nA 226 38.87 c.66.1.7 71102 1ls6A 295 39.90 c.37.1.5 91115 1m6iA 493 40.79 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2bg9A 370 40.81 2o57A 297 41.89 1pjcA 361 42.95 c.2.1.4,c.23.12.2 30101,31361 1zx0A 236 43.05 c.66.1.16 125757 1zrhA 274 43.68 1wznA 252 44.37 c.66.1.43 121525 2bzgA 232 44.79 c.66.1.36 129559 1xtpA 254 45.33 c.66.1.42 116031 1lvlA 458 45.39 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2gqwA 408 46.19 2fhpA 187 47.20 c.66.1.46 133495 1qstA 160 47.48 d.108.1.1 40804 2j5vA 367 48.15 1evyA 366 48.60 a.100.1.6,c.2.1.6 18811,30215 2pbfA 227 52.36 1jq5A 370 53.10 e.22.1.2 67084 2cvjA 180 53.53 3ladA 476 53.64 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2b9wA 424 54.87 1trbA 320 55.09 c.3.1.5,c.3.1.5 30529,30530 2dplA 308 55.67 3bgvA 313 56.18 1pj5A 830 56.85 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1kyqA 274 58.00 c.2.1.11,e.37.1.1 73281,73282 1xxlA 239 58.16 c.66.1.41 116203 1bg6 359 58.63 2v74B 346 58.67 3cggA 195 59.53 3bofA 566 61.41 1qamA 244 61.95 c.66.1.24 34220 2r6oA 294 62.43 3grs 478 62.52 2cy8A 453 63.04 2qh8A 302 63.11 3bkwA 243 63.17 1vimA 200 63.68 c.80.1.3 100758 1zejA 293 63.72 2pujA 286 64.59 2avdA 219 65.15 c.66.1.1 127377 2vojA 371 66.90 1gsoA 431 67.84 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2rebA 352 68.89 c.37.1.11,d.48.1.1 32282,38767 1xvaA 292 69.05 c.66.1.5 34183 2yw2A 424 70.35 2yqzA 263 70.60 1f3lA 321 70.68 c.66.1.6 59630 1n0wA 243 70.74 c.37.1.11 79772 1mqsA 671 72.91 e.25.1.1 79414 1ne2A 200 74.26 c.66.1.32 85586 2ozvA 260 76.00 1zpvA 91 76.12 d.58.18.7 125475 2o95A 187 76.19 2igtA 332 76.81 c.66.1.51 137401 1xdiA 499 77.13 c.3.1.5,d.87.1.1 115160,115161 3bdiA 207 78.23 1womA 271 78.28 2gpyA 233 79.51 2bi7A 384 81.04 1q7zA 566 83.99 c.1.21.2,c.1.26.1 96090,96091 1j99A 293 86.81 c.37.1.5 71618 1gesA 450 88.69 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1lluA 342 89.31 b.35.1.2,c.2.1.1 91064,91065