# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q1rA 431 1.211 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1im8A 244 2.127 c.66.1.14 66212 1fp2A 352 2.360 a.4.5.29,c.66.1.12 59941,59942 2axqA 467 2.399 3c85A 183 3.092 1fp1D 372 3.979 a.4.5.29,c.66.1.12 59939,59940 1ve3A 227 4.730 c.66.1.43 120010 1tw3A 360 6.747 a.4.5.29,c.66.1.12 107373,107374 2fk8A 318 7.079 c.66.1.18 133648 2pxxA 215 7.179 1kpgA 287 7.253 c.66.1.18 68735 1lssA 140 7.526 c.2.1.9 74246 1kjqA 391 7.713 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2dwcA 433 7.985 1m6iA 493 8.155 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2r3sA 335 8.229 2v3aA 384 8.407 2hmvA 144 8.494 c.2.1.9 136615 3d2lA 243 9.092 1trb 320 9.345 2p8jA 209 9.487 1zq9A 285 9.675 c.66.1.24 125505 2gqwA 408 9.844 1x19A 359 10.99 1l1eA 287 11.08 c.66.1.18 73454 2nxcA 254 11.14 c.66.1.39 138739 1y8cA 246 11.29 c.66.1.43 116563 1lsuA 147 11.90 c.2.1.9 74250 2cvjA 180 13.84 2vptA 215 14.22 2p7iA 250 15.34 1id1A 153 15.81 c.2.1.9 62286 2e7fA 262 17.73 3cc8A 230 18.03 2bm8A 236 18.47 c.66.1.50 128771 1qzzA 374 19.24 a.4.5.29,c.66.1.12 96719,96720 1p91A 269 19.34 c.66.1.33 94378 1zx0A 236 20.00 c.66.1.16 125757 3b3fA 341 20.40 3cggA 195 21.49 2aefA 234 21.69 2ip2A 334 22.13 2pn1A 331 22.38 2pbfA 227 22.71 2f8lA 344 22.87 c.66.1.45 133132 1c1dA 355 24.34 c.2.1.7,c.58.1.1 30270,33918 2gpyA 233 24.66 1lvlA 458 25.03 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2v74B 346 25.25 2ogyA 262 25.56 1k1xA 659 25.67 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2cduA 452 26.96 2igtA 332 29.07 c.66.1.51 137401 1yqdA 366 30.00 2pk3A 321 30.34 2r9zA 463 30.48 2dplA 308 30.53 2g1uA 155 31.29 2ozvA 260 32.10 2avnA 260 32.95 c.66.1.41 127380 1qyrA 252 33.31 c.66.1.24 104657 2frnA 278 33.91 c.66.1.47 133993 2eihA 343 33.92 2v03A 303 34.38 1zpvA 91 35.32 d.58.18.7 125475 1fl2A 310 35.76 c.3.1.5,c.3.1.5 59869,59870 2yquA 455 36.00 2dc1A 236 36.44 3cvoA 202 36.59 1nhsA 447 36.60 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1w78A 422 37.48 1uufA 369 37.49 b.35.1.2,c.2.1.1 100006,100007 1i1nA 226 38.13 c.66.1.7 71102 1nhpA 447 38.65 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2yvlA 248 38.82 2d13A 227 39.38 c.26.2.1 131121 2cmgA 262 40.60 1a53 247 40.72 3bxoA 239 41.52 2eq6A 464 43.52 1qamA 244 43.60 c.66.1.24 34220 2o57A 297 43.80 1kyzA 365 44.05 a.4.5.29,c.66.1.12 73312,73313 2avdA 219 44.32 c.66.1.1 127377 1wkvA 389 44.59 c.79.1.1 120989 1xvaA 292 45.93 c.66.1.5 34183 1xxlA 239 47.14 c.66.1.41 116203 3bgvA 313 47.57 1cjcA 460 48.30 c.3.1.1,c.4.1.1 30319,30604 2fhpA 187 48.77 c.66.1.46 133495 1uxoA 192 48.80 c.69.1.31 108121 3grs 478 49.16 1x13A 401 49.25 1uwvA 433 50.17 b.40.4.12,c.66.1.40 100128,100129 1yqzA 438 50.25 2p5yA 311 50.33 1ks9A 291 53.82 a.100.1.7,c.2.1.6 68857,68858 1xhcA 367 54.10 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1kolA 398 54.65 b.35.1.2,c.2.1.1 77474,77475 2bg9E 370 54.94 1yzhA 214 56.14 c.66.1.53 124277 2as0A 396 56.24 b.122.1.9,c.66.1.51 127227,127228 2bi7A 384 56.59 2vefA 314 58.28 1hdoA 206 58.99 c.2.1.2 60965 2vhxA 377 59.31 2gh1A 301 60.10 c.66.1.49 135170 1f3lA 321 60.47 c.66.1.6 59630 1o54A 277 62.49 c.66.1.13 92482 1xngA 268 62.59 c.26.2.1 122186 1qorA 327 63.11 b.35.1.2,c.2.1.1 24766,29782 1ri5A 298 65.30 c.66.1.34 97502 1lluA 342 66.03 b.35.1.2,c.2.1.1 91064,91065 1xtpA 254 67.14 c.66.1.42 116031 2hnkA 239 67.47 1eyeA 280 67.92 c.1.21.1 29672 2pjdA 343 68.10 1w4xA 542 68.79 c.3.1.5,c.3.1.5 109171,109172 1dl5A 317 69.67 c.66.1.7,d.197.1.1 64720,64721 1li4A 432 70.78 c.2.1.4,c.23.12.3 84616,84617 1i36A 264 71.46 a.100.1.8,c.2.1.6 71108,71109 1hkhA 279 71.62 c.69.1.12 90628 2pzmA 330 74.38 1s3iA 310 75.50 b.46.1.1,c.65.1.1 98435,98436 1ws6A 171 76.07 c.66.1.46 121222 2fcaA 213 76.17 c.66.1.53 133262 1hyuA 521 76.30 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2b78A 385 76.92 b.122.1.9,c.66.1.51 128025,128026 1ir6A 424 77.01 c.107.1.2 71342 2zbwA 335 77.13 1v8bA 479 77.24 c.2.1.4,c.23.12.3 113564,113565 1ni5A 433 77.34 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1ne2A 200 77.40 c.66.1.32 85586 2cukA 311 77.57 1kyqA 274 77.77 c.2.1.11,e.37.1.1 73281,73282 3bwyA 214 77.90 2esrA 177 78.23 c.66.1.46 132344 2ywlA 180 78.84 1b6gA 310 81.44 c.69.1.8 34661 1f6yA 262 81.47 c.1.21.2 29673 2vdvE 246 81.62 2cf5A 357 82.20 2i6gA 199 82.85 c.66.1.44 137096 1a0cA 438 83.36 c.1.15.3 29529 1cvl 319 84.59 1h1dA 221 86.07 c.66.1.1 83452 1q0rA 298 87.51 c.69.1.28 95508 1i9gA 280 89.03 c.66.1.13 62090