# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1fp1D	372	1.238	a.4.5.29,c.66.1.12	59939,59940
2hmvA	144	1.694	c.2.1.9	136615
1fp2A	352	2.492	a.4.5.29,c.66.1.12	59941,59942
2p8jA	209	2.557		
1im8A	244	2.691	c.66.1.14	66212
1lssA	140	3.242	c.2.1.9	74246
1lsuA	147	3.374	c.2.1.9	74250
1id1A	153	4.146	c.2.1.9	62286
3c85A	183	4.146		
2nxcA	254	4.268	c.66.1.39	138739
1ve3A	227	4.848	c.66.1.43	120010
2pxxA	215	5.455		
1tw3A	360	5.540	a.4.5.29,c.66.1.12	107373,107374
2r3sA	335	6.091		
1qzzA	374	6.393	a.4.5.29,c.66.1.12	96719,96720
1l1eA	287	7.126	c.66.1.18	73454
2fk8A	318	7.238	c.66.1.18	133648
2g1uA	155	8.141		
2aefA	234	9.428		
1zq9A	285	10.61	c.66.1.24	125505
1q1rA	431	10.99	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1l7dA	384	11.44	c.2.1.4,c.23.12.2	77774,77775
2axqA	467	12.09		
1kpgA	287	12.30	c.66.1.18	68735
2v3aA	384	12.81		
2dwcA	433	13.94		
2e7fA	262	14.00		
2avnA	260	14.34	c.66.1.41	127380
3cc8A	230	14.95		
1wy7A	207	16.24	c.66.1.32	121433
1nhsA	447	16.47	c.3.1.5,c.3.1.5,d.87.1.1	30555,30556,40199
1y8cA	246	17.24	c.66.1.43	116563
3bgvA	313	17.61		
1yqdA	366	18.42		
1ks9A	291	18.45	a.100.1.7,c.2.1.6	68857,68858
2ogyA	262	18.48		
2igtA	332	18.72	c.66.1.51	137401
1x19A	359	18.88		
2o57A	297	19.21		
1nhpA	447	19.21	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
2bm8A	236	19.23	c.66.1.50	128771
1x13A	401	19.33		
1kyzA	365	19.37	a.4.5.29,c.66.1.12	73312,73313
1c1dA	355	19.62	c.2.1.7,c.58.1.1	30270,33918
3bofA	566	19.72		
1uirA	314	19.91	c.66.1.17	99429
2pn1A	331	21.56		
3d2lA	243	21.58		
1zpvA	91	22.24	d.58.18.7	125475
2r9zA	463	22.33		
1qstA	160	22.50	d.108.1.1	40804
1k1xA	659	22.85	a.8.3.2,b.30.5.8,c.6.2.2	84279,84280,84281
2bg9E	370	23.85		
2ew2A	316	24.55		
1xxlA	239	24.62	c.66.1.41	116203
2fhpA	187	25.57	c.66.1.46	133495
2dplA	308	25.80		
1pjcA	361	26.11	c.2.1.4,c.23.12.2	30101,31361
2gpyA	233	27.32		
2pbfA	227	27.88		
2ip2A	334	28.64		
1qyrA	252	28.90	c.66.1.24	104657
2cdcA	366	28.97		
1w78A	422	29.37		
3cggA	195	30.79		
1trb	320	30.90		
1f6yA	262	31.29	c.1.21.2	29673
1ls6A	295	31.78	c.37.1.5	91115
2ffiA	288	32.96	c.1.9.15	133385
2cduA	452	33.71		
2gqwA	408	33.97		
1yzhA	214	34.84	c.66.1.53	124277
2j5vA	367	35.56		
2i6gA	199	37.71	c.66.1.44	137096
2fcaA	213	37.86	c.66.1.53	133262
2bg9A	370	40.14		
2gh1A	301	41.46	c.66.1.49	135170
2avdA	219	41.79	c.66.1.1	127377
1i1nA	226	42.20	c.66.1.7	71102
1l3iA	192	42.47	c.66.1.22	77676
1kjqA	391	43.12	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1pj5A	830	43.72	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
1zrhA	274	44.36		
1ri5A	298	44.38	c.66.1.34	97502
3b3fA	341	44.60		
1a53	247	45.69		
1xtpA	254	45.97	c.66.1.42	116031
1vl5A	260	49.05	c.66.1.41	108720
2yxdA	183	50.88		
1q7zA	566	50.91	c.1.21.2,c.1.26.1	96090,96091
1vimA	200	50.98	c.80.1.3	100758
1m6iA	493	51.25	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
2v74B	346	52.73		
2pkfA	334	52.94		
1j5xA	342	53.49	c.80.1.1	71591
1trbA	320	54.88	c.3.1.5,c.3.1.5	30529,30530
1kyqA	274	54.90	c.2.1.11,e.37.1.1	73281,73282
2ozvA	260	55.73		
2vdvE	246	56.22		
2hmaA	376	56.36		
1fmjA	351	57.32	c.37.1.5	59879
1rjdA	334	57.36	c.66.1.37	97558
1zx0A	236	58.24	c.66.1.16	125757
1uufA	369	58.63	b.35.1.2,c.2.1.1	100006,100007
1t8tA	271	59.64	c.37.1.5	106685
1ne2A	200	60.03	c.66.1.32	85586
2cf5A	357	63.15		
2esrA	177	64.53	c.66.1.46	132344
2ehbD	143	65.61		
1qamA	244	67.73	c.66.1.24	34220
2frnA	278	68.53	c.66.1.47	133993
2vduE	254	68.60		
1p91A	269	70.66	c.66.1.33	94378
2hnkA	239	71.80		
1lvlA	458	72.45	c.3.1.5,c.3.1.5,d.87.1.1	30567,30568,40205
1o54A	277	72.65	c.66.1.13	92482
1dl5A	317	73.87	c.66.1.7,d.197.1.1	64720,64721
3bdiA	207	75.52		
2dc1A	236	76.50		
2vojA	371	77.79		
1uxoA	192	77.86	c.69.1.31	108121
2pqmA	343	77.88		
1n0wA	243	78.57	c.37.1.11	79772
1lluA	342	79.58	b.35.1.2,c.2.1.1	91064,91065
2d13A	227	80.18	c.26.2.1	131121
1h4xA	117	82.31	c.13.2.1	60626
2qh8A	302	84.77		
2pujA	286	84.77		
1j99A	293	85.05	c.37.1.5	71618
1fl2A	310	86.01	c.3.1.5,c.3.1.5	59869,59870
2rebA	352	87.23	c.37.1.11,d.48.1.1	32282,38767
3grs	478	87.37		
3ladA	476	87.57	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1ni5A	433	88.01	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2fytA	340	88.47	c.66.1.6	134391
2iuyA	342	89.65