# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c85A 183 1.046 1fp1D 372 1.941 a.4.5.29,c.66.1.12 59939,59940 2hmvA 144 3.135 c.2.1.9 136615 1ve3A 227 3.143 c.66.1.43 120010 1im8A 244 3.197 c.66.1.14 66212 2o57A 297 3.883 1id1A 153 4.553 c.2.1.9 62286 1w78A 422 4.720 1y8cA 246 4.731 c.66.1.43 116563 2avnA 260 4.756 c.66.1.41 127380 1lssA 140 4.850 c.2.1.9 74246 1q1rA 431 5.169 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2fcaA 213 5.427 c.66.1.53 133262 1fp2A 352 5.614 a.4.5.29,c.66.1.12 59941,59942 3d2lA 243 5.825 2pxxA 215 6.112 2bg9E 370 6.232 1tw3A 360 6.582 a.4.5.29,c.66.1.12 107373,107374 3cggA 195 6.587 1d3cA 686 6.589 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2nxcA 254 6.625 c.66.1.39 138739 1kjqA 391 7.092 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1x19A 359 7.178 1qzzA 374 7.300 a.4.5.29,c.66.1.12 96719,96720 2aefA 234 7.999 1lsuA 147 8.672 c.2.1.9 74250 1l3iA 192 8.706 c.66.1.22 77676 2fk8A 318 9.724 c.66.1.18 133648 3cvoA 202 10.74 2gqwA 408 10.99 2z00A 426 11.20 2yrxA 451 11.20 2ip2A 334 11.29 1ru8A 232 11.39 c.26.2.1 97849 2g1uA 155 11.52 2p8jA 209 12.73 2pqmA 343 14.35 3cc8A 230 14.47 1nhpA 447 14.57 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1ni5A 433 16.11 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1kpgA 287 16.48 c.66.1.18 68735 1zq9A 285 17.78 c.66.1.24 125505 2hmaA 376 18.46 2pbfA 227 18.72 1xvaA 292 19.12 c.66.1.5 34183 2pn1A 331 19.79 2gpyA 233 19.95 2bm8A 236 20.69 c.66.1.50 128771 3bgvA 313 21.68 1wlyA 333 21.86 2e7fA 262 21.95 1xxlA 239 22.50 c.66.1.41 116203 2i6gA 199 22.62 c.66.1.44 137096 2b5wA 357 22.80 2culA 232 22.86 c.3.1.7 130813 1nhsA 447 22.86 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2avdA 219 23.99 c.66.1.1 127377 1i1nA 226 25.18 c.66.1.7 71102 2b78A 385 26.24 b.122.1.9,c.66.1.51 128025,128026 1c1dA 355 26.55 c.2.1.7,c.58.1.1 30270,33918 2yxdA 183 27.35 3bwyA 214 28.56 1ks9A 291 28.69 a.100.1.7,c.2.1.6 68857,68858 1qorA 327 29.58 b.35.1.2,c.2.1.1 24766,29782 1yzhA 214 29.88 c.66.1.53 124277 3c3pA 210 31.08 2vdvE 246 32.48 2ze0A 555 32.68 2cf5A 357 33.14 1qyrA 252 33.43 c.66.1.24 104657 2bs3A 656 35.66 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 1k0fA 277 36.24 c.92.2.2 71974 2gh1A 301 36.41 c.66.1.49 135170 3d1cA 369 36.62 2fhpA 187 37.13 c.66.1.46 133495 3b3fA 341 37.28 1eu8A 409 39.78 c.94.1.1 59502 1jg1A 235 41.56 c.66.1.7 66661 2obfA 289 41.58 1wznA 252 42.46 c.66.1.43 121525 2ozvA 260 42.70 2vptA 215 43.20 1ps9A 671 43.72 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1vl5A 260 43.82 c.66.1.41 108720 2hnkA 239 44.09 2esrA 177 44.14 c.66.1.46 132344 1wxxA 382 44.63 b.122.1.9,c.66.1.51 121418,121419 1q7zA 566 44.68 c.1.21.2,c.1.26.1 96090,96091 1qw9A 502 44.68 b.71.1.2,c.1.8.3 96466,96467 1qstA 160 45.64 d.108.1.1 40804 2uyoA 310 45.75 1l1eA 287 45.78 c.66.1.18 73454 2frnA 278 47.06 c.66.1.47 133993 1pj5A 830 47.56 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1yrlA 491 47.69 1y9aA 360 48.38 2yqzA 263 48.67 2z43A 324 48.77 1uirA 314 49.69 c.66.1.17 99429 2cmgA 262 49.81 1x13A 401 50.40 1h1dA 221 53.66 c.66.1.1 83452 2fytA 340 53.97 c.66.1.6 134391 1ri5A 298 54.42 c.66.1.34 97502 2vhxA 377 54.64 1smdA 496 55.13 b.71.1.1,c.1.8.1 27768,28755 1kq3A 376 55.75 e.22.1.2 68790 1iomA 377 56.02 a.103.1.1 83698 1cjcA 460 59.38 c.3.1.1,c.4.1.1 30319,30604 2pjdA 343 59.50 2i87A 364 59.95 1ls6A 295 60.04 c.37.1.5 91115 1qamA 244 60.45 c.66.1.24 34220 1dl5A 317 60.49 c.66.1.7,d.197.1.1 64720,64721 1wy5A 317 61.28 c.26.2.5,d.229.1.1 121428,121429 1p1mA 406 61.51 b.92.1.4,c.1.9.9 87696,87697 1ne2A 200 61.92 c.66.1.32 85586 2as0A 396 62.56 b.122.1.9,c.66.1.51 127227,127228 2fv7A 331 63.46 c.72.1.1 134197 1zrhA 274 63.59 2r6zA 258 65.17 1sg6A 393 67.20 e.22.1.1 105522 1yb5A 351 68.38 b.35.1.2,c.2.1.1 116601,116602 1cqxA 403 68.93 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1zpvA 91 69.49 d.58.18.7 125475 1p91A 269 70.59 c.66.1.33 94378 1muwA 386 70.91 c.1.15.3 79495 1eyeA 280 71.35 c.1.21.1 29672 1wqaA 455 72.07 1j5xA 342 72.38 c.80.1.1 71591 1rrmA 386 72.51 e.22.1.2 105081 1yqdA 366 72.66 1vimA 200 72.70 c.80.1.3 100758 1kyqA 274 73.37 c.2.1.11,e.37.1.1 73281,73282 3bofA 566 74.55 2r6oA 294 74.71 2bzgA 232 75.34 c.66.1.36 129559 1vzwA 244 75.65 c.1.2.1 120553 2cl5A 221 76.13 c.66.1.1 130570 2pzmA 330 76.40 2gb4A 252 76.89 1xtpA 254 78.27 c.66.1.42 116031 2eihA 343 78.35 1x9iA 302 78.45 c.80.1.1 114997 1pcxA 810 78.74 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2ouiA 360 80.20 2vcyA 344 81.82 1vlmA 219 82.03 c.66.1.41 108836 2pgzA 230 82.46 1jayA 212 82.62 c.2.1.6 66478 1pvvA 315 82.97 c.78.1.1,c.78.1.1 95190,95191 2ew2A 316 83.63 1xp8A 366 84.01 c.37.1.11,d.48.1.1 115735,115736 1oj7A 408 84.18 e.22.1.2 103971 2g72A 289 84.60 c.66.1.15 134724 2iidA 498 85.28 c.3.1.2,d.16.1.5 137426,137427 1ad1A 266 86.88 c.1.21.1 29668 1n82A 331 87.83 c.1.8.3 91703 1xnzA 264 88.05 d.127.1.1 115673 1lvlA 458 88.41 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1i9gA 280 88.97 c.66.1.13 62090