# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fp1D 372 0.9932 a.4.5.29,c.66.1.12 59939,59940 2hmvA 144 1.758 c.2.1.9 136615 1im8A 244 2.196 c.66.1.14 66212 1fp2A 352 2.309 a.4.5.29,c.66.1.12 59941,59942 2p8jA 209 2.394 2r3sA 335 3.114 1lsuA 147 3.355 c.2.1.9 74250 2nxcA 254 3.408 c.66.1.39 138739 1tw3A 360 3.465 a.4.5.29,c.66.1.12 107373,107374 1id1A 153 3.813 c.2.1.9 62286 1ve3A 227 3.921 c.66.1.43 120010 1qzzA 374 4.170 a.4.5.29,c.66.1.12 96719,96720 1lssA 140 5.013 c.2.1.9 74246 3c85A 183 5.514 1l7dA 384 5.854 c.2.1.4,c.23.12.2 77774,77775 2fk8A 318 6.855 c.66.1.18 133648 1l1eA 287 7.014 c.66.1.18 73454 2axqA 467 7.173 2pxxA 215 7.296 2aefA 234 7.374 1zq9A 285 8.584 c.66.1.24 125505 2avnA 260 8.681 c.66.1.41 127380 1q1rA 431 9.392 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3cc8A 230 9.726 2v3aA 384 10.09 1yqdA 366 10.27 1y8cA 246 10.34 c.66.1.43 116563 1x13A 401 10.75 2g1uA 155 10.78 3bgvA 313 10.99 2dwcA 433 11.19 2igtA 332 11.22 c.66.1.51 137401 2bm8A 236 11.47 c.66.1.50 128771 1kpgA 287 11.63 c.66.1.18 68735 1x19A 359 11.70 3d2lA 243 12.28 2o57A 297 13.57 2gpyA 233 13.67 3bofA 566 14.04 2pbfA 227 14.92 1ks9A 291 15.26 a.100.1.7,c.2.1.6 68857,68858 1nhsA 447 15.51 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1c1dA 355 15.54 c.2.1.7,c.58.1.1 30270,33918 1wy7A 207 16.19 c.66.1.32 121433 1kyzA 365 16.19 a.4.5.29,c.66.1.12 73312,73313 1xxlA 239 16.37 c.66.1.41 116203 1uirA 314 16.77 c.66.1.17 99429 1pjcA 361 16.82 c.2.1.4,c.23.12.2 30101,31361 1nhpA 447 18.60 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 3cggA 195 18.78 1k1xA 659 20.62 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2ew2A 316 20.85 2cdcA 366 20.87 2ogyA 262 21.31 2e7fA 262 21.58 1l3iA 192 21.84 c.66.1.22 77676 2r9zA 463 23.01 2gqwA 408 23.08 3b3fA 341 23.24 2pn1A 331 23.34 1qyrA 252 23.38 c.66.1.24 104657 2avdA 219 23.40 c.66.1.1 127377 2fhpA 187 23.48 c.66.1.46 133495 2ip2A 334 24.52 2hmaA 376 25.08 1xtpA 254 25.70 c.66.1.42 116031 1i1nA 226 26.82 c.66.1.7 71102 1yzhA 214 27.30 c.66.1.53 124277 1uufA 369 27.60 b.35.1.2,c.2.1.1 100006,100007 1kjqA 391 28.00 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2cduA 452 28.42 1ls6A 295 29.51 c.37.1.5 91115 1trb 320 29.67 1vimA 200 29.69 c.80.1.3 100758 2ffiA 288 30.07 c.1.9.15 133385 2fcaA 213 30.27 c.66.1.53 133262 1q7zA 566 33.25 c.1.21.2,c.1.26.1 96090,96091 1zpvA 91 33.30 d.58.18.7 125475 2gh1A 301 33.64 c.66.1.49 135170 1kyqA 274 34.67 c.2.1.11,e.37.1.1 73281,73282 1rjdA 334 34.73 c.66.1.37 97558 2bg9E 370 34.93 2dplA 308 35.01 2yxdA 183 35.47 2v74B 346 36.27 1ri5A 298 36.30 c.66.1.34 97502 1j5xA 342 36.87 c.80.1.1 71591 2cf5A 357 37.38 2ozvA 260 38.05 2esrA 177 38.33 c.66.1.46 132344 1zrhA 274 38.66 1p91A 269 39.22 c.66.1.33 94378 1qstA 160 39.53 d.108.1.1 40804 1vl5A 260 39.88 c.66.1.41 108720 2i6gA 199 40.53 c.66.1.44 137096 2j5vA 367 40.78 1zx0A 236 41.55 c.66.1.16 125757 1w78A 422 41.73 1m6iA 493 42.42 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1o54A 277 42.63 c.66.1.13 92482 2hnkA 239 42.73 2h00A 254 44.06 c.66.1.54 135925 2b78A 385 45.29 b.122.1.9,c.66.1.51 128025,128026 1trbA 320 45.82 c.3.1.5,c.3.1.5 30529,30530 1f6yA 262 47.09 c.1.21.2 29673 2pqmA 343 51.88 1lvlA 458 52.40 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1ne2A 200 53.02 c.66.1.32 85586 1dl5A 317 54.09 c.66.1.7,d.197.1.1 64720,64721 2vojA 371 54.82 1fl2A 310 55.34 c.3.1.5,c.3.1.5 59869,59870 1h1dA 221 56.07 c.66.1.1 83452 1pj5A 830 56.83 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2vduE 254 57.11 1a53 247 58.88 1ni5A 433 59.06 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 3ladA 476 59.16 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1fmjA 351 59.51 c.37.1.5 59879 1qamA 244 59.53 c.66.1.24 34220 3bwyA 214 60.25 2frnA 278 60.90 c.66.1.47 133993 2vdvE 246 60.98 1jg1A 235 62.18 c.66.1.7 66661 2bg9A 370 62.90 1lluA 342 63.88 b.35.1.2,c.2.1.1 91064,91065 1zejA 293 63.93 2cl5A 221 63.98 c.66.1.1 130570 2ehbD 143 65.83 1m3sA 186 66.61 c.80.1.3 78573 2fytA 340 67.25 c.66.1.6 134391 1yqzA 438 67.49 1wxxA 382 68.33 b.122.1.9,c.66.1.51 121418,121419 1kolA 398 68.93 b.35.1.2,c.2.1.1 77474,77475 1xdzA 240 69.23 c.66.1.20 115196 1j99A 293 70.65 c.37.1.5 71618 2f8lA 344 71.60 c.66.1.45 133132 2qfmA 364 72.85 1f3lA 321 74.01 c.66.1.6 59630 1uxoA 192 74.11 c.69.1.31 108121 1t8tA 271 76.08 c.37.1.5 106685 1n0wA 243 76.28 c.37.1.11 79772 1xvaA 292 76.31 c.66.1.5 34183 1i4wA 353 79.29 c.66.1.24 66028 1ru8A 232 79.33 c.26.2.1 97849 3cvoA 202 79.72 2iuyA 342 81.11 1xdiA 499 82.98 c.3.1.5,d.87.1.1 115160,115161 1ws6A 171 83.52 c.66.1.46 121222 1or8A 340 84.04 c.66.1.6 93451 2yqzA 263 84.12 2dc1A 236 84.41 2as0A 396 85.44 b.122.1.9,c.66.1.51 127227,127228 1h4xA 117 86.69 c.13.2.1 60626 1jeoA 180 86.74 c.80.1.3 66611 1aquA 297 88.00 c.37.1.5 31942 1kq3A 376 88.66 e.22.1.2 68790 2gb4A 252 88.88 3grs 478 89.50