# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p8jA	209	1.320		
1fp1D	372	2.122	a.4.5.29,c.66.1.12	59939,59940
1fp2A	352	2.309	a.4.5.29,c.66.1.12	59941,59942
1im8A	244	2.445	c.66.1.14	66212
1ve3A	227	2.520	c.66.1.43	120010
2pxxA	215	2.590		
1qzzA	374	4.775	a.4.5.29,c.66.1.12	96719,96720
1id1A	153	6.579	c.2.1.9	62286
2hmvA	144	7.244	c.2.1.9	136615
3c85A	183	7.513		
2nxcA	254	8.141	c.66.1.39	138739
1lssA	140	8.162	c.2.1.9	74246
3cc8A	230	8.275		
2fk8A	318	9.762	c.66.1.18	133648
3d2lA	243	9.890		
1l1eA	287	10.96	c.66.1.18	73454
1lsuA	147	11.94	c.2.1.9	74250
2vdvE	246	12.84		
2bg9E	370	14.75		
1zq9A	285	15.96	c.66.1.24	125505
2avnA	260	16.96	c.66.1.41	127380
1kpgA	287	17.28	c.66.1.18	68735
1y8cA	246	17.34	c.66.1.43	116563
2g1uA	155	18.75		
2ffiA	288	21.52	c.1.9.15	133385
1l7dA	384	22.57	c.2.1.4,c.23.12.2	77774,77775
2ip2A	334	23.29		
1q1rA	431	24.12	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
1kyzA	365	25.75	a.4.5.29,c.66.1.12	73312,73313
1x13A	401	25.76		
2bg9A	370	27.31		
2fcaA	213	28.28	c.66.1.53	133262
1yzhA	214	29.39	c.66.1.53	124277
2pbfA	227	29.71		
3bwyA	214	29.99		
1nhpA	447	30.16	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1nhsA	447	30.51	c.3.1.5,c.3.1.5,d.87.1.1	30555,30556,40199
2r3sA	335	31.11		
2i6gA	199	31.68	c.66.1.44	137096
2v3aA	384	31.75		
2aefA	234	34.20		
1w78A	422	35.01		
1wy7A	207	35.56	c.66.1.32	121433
2gpyA	233	37.77		
1ri5A	298	37.92	c.66.1.34	97502
2dwcA	433	38.66		
1uirA	314	42.51	c.66.1.17	99429
1ks9A	291	43.38	a.100.1.7,c.2.1.6	68857,68858
2vduE	254	43.56		
1qstA	160	43.97	d.108.1.1	40804
1c1dA	355	44.67	c.2.1.7,c.58.1.1	30270,33918
2igtA	332	44.92	c.66.1.51	137401
3bofA	566	45.08		
1yqdA	366	45.43		
2ew2A	316	45.86		
2axqA	467	46.51		
1k1xA	659	46.54	a.8.3.2,b.30.5.8,c.6.2.2	84279,84280,84281
2cduA	452	46.57		
2fhpA	187	47.80	c.66.1.46	133495
1zrhA	274	47.88		
2cf5A	357	47.99		
1pjcA	361	48.15	c.2.1.4,c.23.12.2	30101,31361
2v74B	346	49.80		
1a53	247	49.91		
2ozvA	260	51.08		
2dplA	308	51.84		
1ls6A	295	52.91	c.37.1.5	91115
1x19A	359	53.31		
2yvlA	248	55.19		
2esrA	177	55.42	c.66.1.46	132344
2p7iA	250	59.29		
1j5xA	342	60.41	c.80.1.1	71591
1xtpA	254	60.51	c.66.1.42	116031
2r9zA	463	60.81		
1i1nA	226	60.95	c.66.1.7	71102
1kyqA	274	61.48	c.2.1.11,e.37.1.1	73281,73282
1qyrA	252	62.18	c.66.1.24	104657
1zx0A	236	63.77	c.66.1.16	125757
1q7zA	566	64.93	c.1.21.2,c.1.26.1	96090,96091
1m6iA	493	65.54	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1xxlA	239	66.09	c.66.1.41	116203
1f6yA	262	68.87	c.1.21.2	29673
3cvoA	202	69.49		
1zpvA	91	70.77	d.58.18.7	125475
2pn1A	331	72.10		
2frnA	278	72.77	c.66.1.47	133993
1n0wA	243	73.89	c.37.1.11	79772
1trb	320	75.32		
2cdcA	366	75.35		
2dc1A	236	75.49		
2vojA	371	76.70		
1pj5A	830	76.85	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
2owpA	129	77.48		
2cl5A	221	78.35	c.66.1.1	130570
2gqwA	408	78.74		
1ne2A	200	78.95	c.66.1.32	85586
1tw3A	360	79.00	a.4.5.29,c.66.1.12	107373,107374
2avdA	219	79.92	c.66.1.1	127377
1mqsA	671	83.19	e.25.1.1	79414
3bxoA	239	83.70		
1f3lA	321	84.37	c.66.1.6	59630
3b3fA	341	84.74		
2e7fA	262	85.81		
3cggA	195	87.59		
2b9wA	424	88.81