# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p8jA 209 1.599 1ve3A 227 2.062 c.66.1.43 120010 1fp2A 352 2.499 a.4.5.29,c.66.1.12 59941,59942 2pxxA 215 3.705 1im8A 244 4.348 c.66.1.14 66212 1fp1D 372 4.645 a.4.5.29,c.66.1.12 59939,59940 2hmvA 144 5.222 c.2.1.9 136615 1lssA 140 5.976 c.2.1.9 74246 1qzzA 374 6.341 a.4.5.29,c.66.1.12 96719,96720 1lsuA 147 7.228 c.2.1.9 74250 2nxcA 254 7.713 c.66.1.39 138739 3c85A 183 8.555 1l1eA 287 8.564 c.66.1.18 73454 2fk8A 318 9.414 c.66.1.18 133648 1kpgA 287 10.25 c.66.1.18 68735 3d2lA 243 10.43 3cc8A 230 10.82 1id1A 153 11.34 c.2.1.9 62286 1l7dA 384 12.26 c.2.1.4,c.23.12.2 77774,77775 1q1rA 431 12.63 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1yqdA 366 16.10 2p7iA 250 17.59 2vdvE 246 17.94 1x13A 401 18.39 2ip2A 334 18.75 1pjcA 361 20.01 c.2.1.4,c.23.12.2 30101,31361 1nhpA 447 20.22 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1y8cA 246 21.21 c.66.1.43 116563 2e7fA 262 21.96 1c1dA 355 22.21 c.2.1.7,c.58.1.1 30270,33918 1nhsA 447 22.54 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2aefA 234 23.10 1i1nA 226 23.37 c.66.1.7 71102 2r3sA 335 23.54 2axqA 467 23.66 2avnA 260 23.85 c.66.1.41 127380 2v3aA 384 23.94 2ogyA 262 24.32 2i6gA 199 24.70 c.66.1.44 137096 2fcaA 213 25.37 c.66.1.53 133262 2igtA 332 25.42 c.66.1.51 137401 1zq9A 285 27.31 c.66.1.24 125505 2g1uA 155 28.32 1yzhA 214 28.60 c.66.1.53 124277 1kyqA 274 29.37 c.2.1.11,e.37.1.1 73281,73282 1k1xA 659 29.74 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1f6yA 262 32.83 c.1.21.2 29673 1kyzA 365 32.86 a.4.5.29,c.66.1.12 73312,73313 2bg9E 370 33.18 1pj5A 830 35.37 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2dplA 308 35.82 2dwcA 433 35.90 2cf5A 357 36.09 2r9zA 463 36.28 1uufA 369 37.07 b.35.1.2,c.2.1.1 100006,100007 1j5xA 342 37.27 c.80.1.1 71591 2pbfA 227 37.72 2vduE 254 37.99 3cvoA 202 38.05 3bofA 566 38.13 1tw3A 360 38.61 a.4.5.29,c.66.1.12 107373,107374 1ls6A 295 39.04 c.37.1.5 91115 1zrhA 274 39.39 1x19A 359 39.80 2gqwA 408 42.20 1a53 247 42.23 2pn1A 331 43.25 1qyrA 252 44.58 c.66.1.24 104657 2vojA 371 45.73 1qstA 160 46.05 d.108.1.1 40804 2bg9A 370 47.43 1kjqA 391 48.37 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2o57A 297 48.97 1zpvA 91 49.89 d.58.18.7 125475 1m6iA 493 49.98 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2cduA 452 51.44 2bzgA 232 51.93 c.66.1.36 129559 3cggA 195 51.97 1trb 320 52.54 3bwyA 214 52.91 1uirA 314 58.09 c.66.1.17 99429 1xxlA 239 58.68 c.66.1.41 116203 1jg1A 235 59.12 c.66.1.7 66661 1wy7A 207 59.85 c.66.1.32 121433 2ew2A 316 62.54 1q7zA 566 63.05 c.1.21.2,c.1.26.1 96090,96091 1ks9A 291 63.34 a.100.1.7,c.2.1.6 68857,68858 2ozvA 260 64.44 1dl5A 317 65.28 c.66.1.7,d.197.1.1 64720,64721 1lluA 342 66.43 b.35.1.2,c.2.1.1 91064,91065 2h00A 254 66.99 c.66.1.54 135925 2gpyA 233 67.10 1j99A 293 67.49 c.37.1.5 71618 1fl2A 310 67.86 c.3.1.5,c.3.1.5 59869,59870 1trbA 320 69.50 c.3.1.5,c.3.1.5 30529,30530 1fmjA 351 69.72 c.37.1.5 59879 2eq6A 464 71.55 1ri5A 298 74.71 c.66.1.34 97502 1qamA 244 76.36 c.66.1.24 34220 2frnA 278 77.11 c.66.1.47 133993 1t8tA 271 77.31 c.37.1.5 106685 2esrA 177 78.53 c.66.1.46 132344 2gb4A 252 78.61 1bg6 359 79.34 1lvlA 458 79.85 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1zx0A 236 80.12 c.66.1.16 125757 1uxoA 192 80.54 c.69.1.31 108121 2ehbD 143 80.73 2yvlA 248 81.70 3bdiA 207 83.25 1rjdA 334 84.83 c.66.1.37 97558 2fhpA 187 84.91 c.66.1.46 133495 2bm8A 236 85.12 c.66.1.50 128771 1uwvA 433 85.53 b.40.4.12,c.66.1.40 100128,100129 2ffiA 288 86.14 c.1.9.15 133385 2ov8A 288 88.54 2avdA 219 88.76 c.66.1.1 127377 1w78A 422 88.86 2dc1A 236 89.98