# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p8jA	209	1.395		
1im8A	244	2.114	c.66.1.14	66212
1ve3A	227	2.325	c.66.1.43	120010
1fp1D	372	2.346	a.4.5.29,c.66.1.12	59939,59940
1fp2A	352	2.397	a.4.5.29,c.66.1.12	59941,59942
2pxxA	215	3.458		
1lssA	140	3.530	c.2.1.9	74246
1qzzA	374	4.680	a.4.5.29,c.66.1.12	96719,96720
1l1eA	287	5.486	c.66.1.18	73454
2hmvA	144	5.942	c.2.1.9	136615
2fk8A	318	6.091	c.66.1.18	133648
2nxcA	254	6.499	c.66.1.39	138739
1id1A	153	6.561	c.2.1.9	62286
3c85A	183	8.041		
1lsuA	147	8.285	c.2.1.9	74250
2ip2A	334	8.404		
1kpgA	287	8.638	c.66.1.18	68735
2r3sA	335	9.608		
2g1uA	155	11.25		
3d2lA	243	11.49		
3cc8A	230	11.75		
2avnA	260	12.41	c.66.1.41	127380
1y8cA	246	12.86	c.66.1.43	116563
1q1rA	431	13.57	c.3.1.5,c.3.1.5,d.87.1.1	95600,95601,95602
2i6gA	199	16.14	c.66.1.44	137096
2vdvE	246	18.59		
1tw3A	360	20.21	a.4.5.29,c.66.1.12	107373,107374
3cggA	195	20.39		
2igtA	332	21.00	c.66.1.51	137401
2ffiA	288	21.57	c.1.9.15	133385
1trbA	320	22.07	c.3.1.5,c.3.1.5	30529,30530
1kyzA	365	22.71	a.4.5.29,c.66.1.12	73312,73313
1x13A	401	22.81		
2aefA	234	22.87		
1zq9A	285	22.94	c.66.1.24	125505
2pbfA	227	23.10		
1trb	320	24.28		
2bg9E	370	24.55		
2p7iA	250	24.60		
3cvoA	202	25.13		
1nhpA	447	25.18	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
2v3aA	384	25.68		
1c1dA	355	25.85	c.2.1.7,c.58.1.1	30270,33918
1yqdA	366	26.17		
1x19A	359	27.29		
3bofA	566	28.00		
2bg9A	370	28.31		
2gqwA	408	28.60		
2e7fA	262	28.91		
2axqA	467	29.31		
1nhsA	447	30.14	c.3.1.5,c.3.1.5,d.87.1.1	30555,30556,40199
2fcaA	213	31.59	c.66.1.53	133262
1ri5A	298	31.83	c.66.1.34	97502
1f6yA	262	34.60	c.1.21.2	29673
1uirA	314	34.85	c.66.1.17	99429
1l7dA	384	35.05	c.2.1.4,c.23.12.2	77774,77775
1pjcA	361	35.58	c.2.1.4,c.23.12.2	30101,31361
1a53	247	36.03		
1i1nA	226	37.01	c.66.1.7	71102
1yzhA	214	37.26	c.66.1.53	124277
1zpvA	91	39.14	d.58.18.7	125475
1k1xA	659	39.33	a.8.3.2,b.30.5.8,c.6.2.2	84279,84280,84281
2avdA	219	39.89	c.66.1.1	127377
1ks9A	291	40.25	a.100.1.7,c.2.1.6	68857,68858
1ls6A	295	40.97	c.37.1.5	91115
1zrhA	274	41.57		
1xtpA	254	41.92	c.66.1.42	116031
2ozvA	260	45.18		
3bwyA	214	45.28		
1m6iA	493	46.14	c.3.1.5,c.3.1.5,d.87.1.1	74533,74534,74535
1kyqA	274	46.20	c.2.1.11,e.37.1.1	73281,73282
2ew2A	316	47.20		
1fl2A	310	47.67	c.3.1.5,c.3.1.5	59869,59870
1q7zA	566	48.32	c.1.21.2,c.1.26.1	96090,96091
2r9zA	463	48.39		
2ogyA	262	49.16		
2cduA	452	49.20		
2vduE	254	49.89		
2esrA	177	50.10	c.66.1.46	132344
2dplA	308	51.33		
1pj5A	830	51.46	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
2fhpA	187	52.45	c.66.1.46	133495
1j5xA	342	53.23	c.80.1.1	71591
2cf5A	357	53.65		
1wy7A	207	54.33	c.66.1.32	121433
2bzgA	232	56.85	c.66.1.36	129559
2yvlA	248	57.74		
2pujA	286	58.51		
1j99A	293	58.70	c.37.1.5	71618
2gpyA	233	59.27		
1lvlA	458	60.40	c.3.1.5,c.3.1.5,d.87.1.1	30567,30568,40205
1uwvA	433	60.45	b.40.4.12,c.66.1.40	100128,100129
1wznA	252	62.15	c.66.1.43	121525
2vojA	371	62.35		
2dwcA	433	62.78		
2pn1A	331	63.22		
1fmjA	351	63.86	c.37.1.5	59879
1w78A	422	64.03		
1zx0A	236	64.70	c.66.1.16	125757
1xxlA	239	65.52	c.66.1.41	116203
1ne2A	200	67.73	c.66.1.32	85586
1t8tA	271	67.85	c.37.1.5	106685
2pjdA	343	69.10		
2frnA	278	70.90	c.66.1.47	133993
2v74B	346	70.90		
1qstA	160	71.00	d.108.1.1	40804
3bdiA	207	71.77		
1uufA	369	72.34	b.35.1.2,c.2.1.1	100006,100007
2o57A	297	72.53		
1n0wA	243	75.16	c.37.1.11	79772
2ex4A	241	76.42	c.66.1.42	132516
1ni5A	433	76.54	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1xklA	273	76.65	c.69.1.20	115410
2bi7A	384	77.02		
2vhxA	377	77.78		
3b3fA	341	78.72		
3c3yA	237	81.03		
1u2eA	289	81.08		
1rjdA	334	82.45	c.66.1.37	97558
1qyrA	252	83.11	c.66.1.24	104657
2b9wA	424	84.28		
3bxoA	239	84.43		
2fytA	340	86.27	c.66.1.6	134391
2cvjA	180	88.89		
1qamA	244	89.99	c.66.1.24	34220