# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fp2A 352 1.531 a.4.5.29,c.66.1.12 59941,59942 1im8A 244 2.331 c.66.1.14 66212 1ve3A 227 2.508 c.66.1.43 120010 3ckkA 235 2.518 1kpgA 287 2.557 c.66.1.18 68735 2r3sA 335 3.219 2pxxA 215 3.240 2fk8A 318 3.348 c.66.1.18 133648 1qzzA 374 4.249 a.4.5.29,c.66.1.12 96719,96720 2hmvA 144 4.823 c.2.1.9 136615 1l1eA 287 5.254 c.66.1.18 73454 1x19A 359 5.474 1fp1D 372 5.520 a.4.5.29,c.66.1.12 59939,59940 2p8jA 209 5.687 1eyeA 280 5.832 c.1.21.1 29672 2axqA 467 6.095 1lssA 140 6.135 c.2.1.9 74246 1lsuA 147 6.163 c.2.1.9 74250 2ip2A 334 6.245 3c85A 183 7.019 1q1rA 431 7.669 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1zq9A 285 7.781 c.66.1.24 125505 2dwcA 433 7.989 3d2lA 243 8.081 2p7iA 250 8.142 2vptA 215 8.157 2vdvE 246 8.642 1id1A 153 9.450 c.2.1.9 62286 2ffiA 288 9.629 c.1.9.15 133385 2f8lA 344 10.19 c.66.1.45 133132 2vduE 254 10.27 1kjqA 391 10.48 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1tw3A 360 10.91 a.4.5.29,c.66.1.12 107373,107374 3bxoA 239 11.20 3bwyA 214 11.75 2nxcA 254 12.53 c.66.1.39 138739 1dl5A 317 13.63 c.66.1.7,d.197.1.1 64720,64721 1m6iA 493 14.52 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2i87A 364 15.88 1lehA 364 15.92 c.2.1.7,c.58.1.1 30268,33916 1jayA 212 16.07 c.2.1.6 66478 2g1uA 155 16.07 1qyrA 252 16.60 c.66.1.24 104657 2vhxA 377 16.87 1yzhA 214 17.18 c.66.1.53 124277 1yrlA 491 18.50 3b3fA 341 18.54 2fcaA 213 18.57 c.66.1.53 133262 2v74B 346 19.62 2pjdA 343 20.73 1y8cA 246 20.81 c.66.1.43 116563 2pn1A 331 22.28 2pkfA 334 22.30 1l7dA 384 22.47 c.2.1.4,c.23.12.2 77774,77775 2vefA 314 22.48 2avnA 260 22.89 c.66.1.41 127380 2cl5A 221 24.73 c.66.1.1 130570 2ogyA 262 24.79 1f6yA 262 25.19 c.1.21.2 29673 2aefA 234 25.79 1wznA 252 26.32 c.66.1.43 121525 1uirA 314 26.35 c.66.1.17 99429 3cggA 195 26.36 1pjcA 361 27.03 c.2.1.4,c.23.12.2 30101,31361 2gh1A 301 27.20 c.66.1.49 135170 1ri5A 298 28.61 c.66.1.34 97502 2v03A 303 28.74 1k1xA 659 28.85 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2pqmA 343 28.87 2dc1A 236 29.08 2e7fA 262 30.49 2q4eA 362 30.70 1ks9A 291 30.80 a.100.1.7,c.2.1.6 68857,68858 1zx0A 236 31.12 c.66.1.16 125757 1rjdA 334 31.61 c.66.1.37 97558 1f3lA 321 31.66 c.66.1.6 59630 1c1dA 355 31.67 c.2.1.7,c.58.1.1 30270,33918 1qamA 244 33.11 c.66.1.24 34220 1a0cA 438 33.24 c.1.15.3 29529 2o57A 297 34.13 2i3dA 249 34.55 1hdoA 206 34.93 c.2.1.2 60965 1x13A 401 35.22 1xtpA 254 35.41 c.66.1.42 116031 1xgkA 352 37.03 c.2.1.2 115286 2v3aA 384 37.82 1xxlA 239 39.17 c.66.1.41 116203 1trb 320 39.52 1h1dA 221 41.05 c.66.1.1 83452 1kolA 398 41.12 b.35.1.2,c.2.1.1 77474,77475 1bg6A 359 41.20 a.100.1.5,c.2.1.6 18810,30214 2cvjA 180 41.21 2eihA 343 41.56 2gpyA 233 41.87 1ad1A 266 42.07 c.1.21.1 29668 1k20A 310 42.40 c.107.1.1 68027 3c6kA 381 43.95 2uyoA 310 44.13 2fytA 340 46.41 c.66.1.6 134391 1i36A 264 47.35 a.100.1.8,c.2.1.6 71108,71109 2qe6A 274 47.58 2yxdA 183 49.35 1xvaA 292 49.44 c.66.1.5 34183 2qfmA 364 49.55 1mv8A 436 50.80 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1cjcA 460 51.72 c.3.1.1,c.4.1.1 30319,30604 2hqyA 305 52.80 3cvjA 243 52.81 1bg6 359 53.99 2ibtA 421 54.02 c.66.1.27,d.287.1.1 137205,137206 1ir6A 424 56.55 c.107.1.2 71342 2exxA 306 57.68 2bg9E 370 59.60 1wy7A 207 59.97 c.66.1.32 121433 1r1dA 247 60.28 c.69.1.29 96813 1epuA 591 61.13 e.25.1.1 43358 2bi7A 384 62.27 2avdA 219 64.59 c.66.1.1 127377 2i6gA 199 64.99 c.66.1.44 137096 2vojA 371 65.43 2bm8A 236 66.74 c.66.1.50 128771 2q3bA 313 68.55 3cvoA 202 68.57 1x0vA 354 68.79 2cukA 311 69.02 2fqxA 318 69.71 2c29D 337 69.74 1muwA 386 70.27 c.1.15.3 79495 1vl5A 260 70.53 c.66.1.41 108720 1rkqA 282 70.85 c.108.1.10 97621 1hyhA 309 71.10 c.2.1.5,d.162.1.1 30150,42117 1kyzA 365 71.24 a.4.5.29,c.66.1.12 73312,73313 2eklA 313 75.43 2ew2A 316 75.73 2bg9A 370 76.79 1nvmA 345 77.04 a.5.7.1,c.1.10.5 86249,86250 2bzgA 232 77.21 c.66.1.36 129559 2ozvA 260 77.55 1ls6A 295 77.63 c.37.1.5 91115 1v8bA 479 78.81 c.2.1.4,c.23.12.3 113564,113565 2hnkA 239 80.01 1brt 277 80.06 3d64A 494 80.88 2q02A 272 81.02 1qorA 327 81.36 b.35.1.2,c.2.1.1 24766,29782 1ne2A 200 81.80 c.66.1.32 85586 1l3iA 192 82.30 c.66.1.22 77676 3cc8A 230 82.54 2gqwA 408 82.63 1i4wA 353 83.37 c.66.1.24 66028 2pk3A 321 83.50 2i2wA 212 83.54 3b89A 252 84.26 1f8yA 157 84.27 c.23.14.1 31395 2ixaA 444 84.93 2r6jA 318 85.06 1wlyA 333 86.14 1zejA 293 87.30 2pzmA 330 88.38 1vpdA 299 88.42 a.100.1.1,c.2.1.6 113951,113952 1i9gA 280 88.60 c.66.1.13 62090