# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p8jA 209 1.612 1qzzA 374 1.787 a.4.5.29,c.66.1.12 96719,96720 1fp1D 372 2.127 a.4.5.29,c.66.1.12 59939,59940 2r3sA 335 2.626 2pxxA 215 2.837 1ve3A 227 2.851 c.66.1.43 120010 3c85A 183 4.408 1kyzA 365 4.422 a.4.5.29,c.66.1.12 73312,73313 1fp2A 352 4.876 a.4.5.29,c.66.1.12 59941,59942 1im8A 244 5.024 c.66.1.14 66212 3bxoA 239 5.115 1wznA 252 5.626 c.66.1.43 121525 1x19A 359 5.747 1tw3A 360 6.158 a.4.5.29,c.66.1.12 107373,107374 2dwcA 433 6.801 2fcaA 213 7.960 c.66.1.53 133262 1l1eA 287 8.245 c.66.1.18 73454 3bgvA 313 8.445 2avnA 260 8.727 c.66.1.41 127380 2axqA 467 8.905 2fk8A 318 9.146 c.66.1.18 133648 3ckkA 235 9.493 1kpgA 287 9.508 c.66.1.18 68735 1y8cA 246 9.543 c.66.1.43 116563 2bi7A 384 9.656 2vptA 215 9.785 2hmvA 144 9.804 c.2.1.9 136615 2i87A 364 9.860 1kjqA 391 9.874 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1lssA 140 10.28 c.2.1.9 74246 1id1A 153 10.35 c.2.1.9 62286 3d2lA 243 10.62 1m6iA 493 10.66 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 3cc8A 230 12.10 1yzhA 214 12.20 c.66.1.53 124277 1trb 320 12.72 1zq9A 285 14.33 c.66.1.24 125505 3bwyA 214 15.72 2pn1A 331 15.84 2vdvE 246 18.22 2f8lA 344 18.22 c.66.1.45 133132 2p7iA 250 18.46 1lsuA 147 18.55 c.2.1.9 74250 1k1xA 659 18.73 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1qyrA 252 18.83 c.66.1.24 104657 2cl5A 221 18.84 c.66.1.1 130570 1xtpA 254 20.23 c.66.1.42 116031 1a53 247 21.31 3b3fA 341 21.48 2ew2A 316 21.48 1wy7A 207 22.52 c.66.1.32 121433 1a9xA 1058 22.53 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2gh1A 301 22.82 c.66.1.49 135170 1qorA 327 23.54 b.35.1.2,c.2.1.1 24766,29782 2aefA 234 24.59 1dl5A 317 24.65 c.66.1.7,d.197.1.1 64720,64721 2yrxA 451 24.78 2o57A 297 24.81 1cs0A 1073 25.18 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1xxlA 239 26.08 c.66.1.41 116203 2d8aA 348 26.44 1ir6A 424 26.84 c.107.1.2 71342 2v3aA 384 27.58 2eihA 343 27.61 1xvaA 292 28.02 c.66.1.5 34183 2ffiA 288 28.07 c.1.9.15 133385 1w4xA 542 28.17 c.3.1.5,c.3.1.5 109171,109172 2v74B 346 28.46 1q1rA 431 28.83 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1x0vA 354 28.84 2hmaA 376 29.77 2nxcA 254 31.45 c.66.1.39 138739 2fb9A 322 32.57 2cduA 452 34.77 2hqyA 305 35.04 1ks9A 291 35.58 a.100.1.7,c.2.1.6 68857,68858 1eyeA 280 35.61 c.1.21.1 29672 1h1dA 221 35.75 c.66.1.1 83452 1vl5A 260 35.95 c.66.1.41 108720 1ad1A 266 35.98 c.1.21.1 29668 1bg6 359 36.38 1p91A 269 36.51 c.66.1.33 94378 2gqwA 408 36.97 2vhxA 377 37.05 1nhpA 447 37.24 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1cjcA 460 37.25 c.3.1.1,c.4.1.1 30319,30604 2cdcA 366 38.03 1nhsA 447 41.06 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2eq6A 464 41.11 2gpyA 233 43.36 1ne2A 200 44.90 c.66.1.32 85586 1zx0A 236 45.56 c.66.1.16 125757 3cox 507 47.16 2r9zA 463 48.91 1kolA 398 50.14 b.35.1.2,c.2.1.1 77474,77475 1kq3A 376 52.29 e.22.1.2 68790 1j5xA 342 52.49 c.80.1.1 71591 3cggA 195 53.19 1f3lA 321 53.73 c.66.1.6 59630 1qamA 244 54.04 c.66.1.24 34220 2yxdA 183 54.69 2ip2A 334 54.77 2g1uA 155 55.25 2qe6A 274 55.82 2hnkA 239 56.48 2cvjA 180 58.84 1zi8A 236 62.20 1lvlA 458 63.12 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1gpeA 587 64.98 c.3.1.2,d.16.1.1 30387,37951 1mv8A 436 65.10 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1c1dA 355 66.15 c.2.1.7,c.58.1.1 30270,33918 1pjcA 361 66.71 c.2.1.4,c.23.12.2 30101,31361 2yquA 455 67.82 1qnrA 344 67.99 c.1.8.3 28834 1i1nA 226 69.63 c.66.1.7 71102 1ni5A 433 71.28 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2vefA 314 72.52 2rghA 571 73.04 1kyqA 274 76.07 c.2.1.11,e.37.1.1 73281,73282 2culA 232 77.85 c.3.1.7 130813 1i4wA 353 78.00 c.66.1.24 66028 1or8A 340 78.47 c.66.1.6 93451 2vojA 371 79.80 1o54A 277 79.95 c.66.1.13 92482 2yqzA 263 80.07 1zmdA 474 80.20 2pkfA 334 81.46 2vduE 254 81.61 2pujA 286 81.81 1yrlA 491 82.93 1ri5A 298 83.47 c.66.1.34 97502 1txgA 335 84.88 a.100.1.6,c.2.1.6 112775,112776 2ov8A 288 85.19 2p5yA 311 85.31 1bg6A 359 85.32 a.100.1.5,c.2.1.6 18810,30214 1i9gA 280 86.67 c.66.1.13 62090 1epuA 591 86.99 e.25.1.1 43358 2fytA 340 86.99 c.66.1.6 134391 2avdA 219 87.80 c.66.1.1 127377 3bdiA 207 87.94 1jq5A 370 89.27 e.22.1.2 67084