# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3d2lA 243 1.609 3bxoA 239 2.148 2pbfA 227 3.119 3d64A 494 4.349 2v74B 346 5.365 1v8bA 479 5.782 c.2.1.4,c.23.12.3 113564,113565 1w24A 182 5.971 d.159.1.7 120579 3b3fA 341 6.112 1xvaA 292 6.789 c.66.1.5 34183 2axqA 467 7.212 1yizA 429 7.312 c.67.1.1 123375 1l1eA 287 7.413 c.66.1.18 73454 1im8A 244 8.461 c.66.1.14 66212 2qa1A 500 8.674 1gdeA 389 9.047 c.67.1.1 60456 2a22A 215 9.407 d.159.1.7 126025 2p8jA 209 10.02 2fk8A 318 10.17 c.66.1.18 133648 1oc2A 348 10.34 c.2.1.2 92765 2douA 376 10.60 1tw3A 360 10.62 a.4.5.29,c.66.1.12 107373,107374 1q1rA 431 10.86 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1xm7A 195 11.30 d.159.1.8 115473 1ve3A 227 11.36 c.66.1.43 120010 1y8qB 640 12.92 1fp1D 372 14.36 a.4.5.29,c.66.1.12 59939,59940 1qzzA 374 14.45 a.4.5.29,c.66.1.12 96719,96720 1x2gA 337 14.55 1yovA 537 14.56 c.111.1.2 123785 1wznA 252 15.10 c.66.1.43 121525 1ks9A 291 15.75 a.100.1.7,c.2.1.6 68857,68858 1d2fA 390 16.07 c.67.1.3 34411 2cvjA 180 16.49 1y8qA 346 17.37 2ahdA 165 17.40 d.159.1.7 126752 2po3A 424 18.31 2ip2A 334 18.40 1kjqA 391 19.16 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1n2eA 300 20.86 c.26.1.4 85268 1kpgA 287 21.32 c.66.1.18 68735 1zq9A 285 22.03 c.66.1.24 125505 2ogeA 399 22.20 3bn1A 373 22.82 1t2aA 375 22.89 c.2.1.2 99078 1lhpA 312 23.03 c.72.1.5 77960 1y8cA 246 23.29 c.66.1.43 116563 1li4A 432 23.59 c.2.1.4,c.23.12.3 84616,84617 3grsA 478 24.32 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2fytA 340 24.36 c.66.1.6 134391 2gqwA 408 24.76 3cgvA 397 26.30 2i6gA 199 26.62 c.66.1.44 137096 2yvlA 248 26.92 1uufA 369 27.31 b.35.1.2,c.2.1.1 100006,100007 2pk3A 321 27.93 1npyA 271 28.09 c.2.1.7,c.58.1.5 85995,85996 2bm8A 236 28.70 c.66.1.50 128771 2eklA 313 29.43 1w7lA 422 29.53 c.67.1.1 109226 2fhpA 187 30.40 c.66.1.46 133495 1c7nA 399 31.43 c.67.1.3 34413 3b46A 447 31.49 2esrA 177 32.41 c.66.1.46 132344 1j32A 388 32.66 c.67.1.1 77067 1assA 159 33.34 c.8.5.2 30818 3c1oA 321 33.59 3b8xA 390 33.82 2bs3A 656 33.87 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2o0rA 411 34.20 1ykjA 394 34.28 1f3lA 321 34.51 c.66.1.6 59630 1o69A 394 34.67 c.67.1.4 92560 2vouA 397 34.80 2eq6A 464 35.26 1c0pA 363 36.09 c.4.1.2,d.16.1.3 30647,37934 1m6iA 493 36.18 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2r3sA 335 36.33 1a9xA 1058 36.66 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2gasA 307 37.33 2exxA 306 37.74 2v3aA 384 38.01 2ejbA 189 38.37 2c29D 337 39.76 2ggsA 273 39.79 1orrA 347 40.49 c.2.1.2 93460 3bcxA 437 40.52 2vq3A 215 40.53 2yxeA 215 40.97 1x19A 359 42.08 2dbqA 334 42.10 1z2wA 192 43.36 d.159.1.7 124390 3grs 478 43.81 2hcyA 347 43.86 1or8A 340 44.34 c.66.1.6 93451 1o4sA 389 44.76 c.67.1.1 86620 1kyqA 274 46.08 c.2.1.11,e.37.1.1 73281,73282 1ub0A 258 46.15 c.72.1.2 88394 1dv1A 449 47.63 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2gpyA 233 47.90 2cf5A 357 48.52 2nxcA 254 48.81 c.66.1.39 138739 2yxdA 183 48.82 1hyuA 521 48.85 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1yqdA 366 49.01 1qp8A 303 49.19 c.2.1.4,c.23.12.1 30092,31352 3ce9A 354 49.25 2c5aA 379 50.16 c.2.1.2 129894 2gb3A 409 50.31 c.67.1.1 134903 1k0iA 394 51.56 c.3.1.2,d.16.1.2 67942,67943 1af7 274 51.76 1l7dA 384 53.16 c.2.1.4,c.23.12.2 77774,77775 1jxhA 288 53.64 c.72.1.2 67415 1v2dA 381 54.41 c.67.1.1 108281 1gdhA 320 54.74 c.2.1.4,c.23.12.1 30095,31355 2q4eA 362 54.81 1i1nA 226 55.37 c.66.1.7 71102 2a84A 300 55.76 c.26.1.4 126389 2culA 232 55.76 c.3.1.7 130813 1c1dA 355 55.93 c.2.1.7,c.58.1.1 30270,33918 2dwcA 433 56.51 2c81A 418 56.73 2ozvA 260 57.21 2vcyA 344 57.27 1y1pA 342 57.32 c.2.1.2 122550 2nacA 393 57.38 c.2.1.4,c.23.12.1 30088,31348 1fp2A 352 57.81 a.4.5.29,c.66.1.12 59941,59942 2b69A 343 57.97 c.2.1.2 127974 1u08A 386 58.14 c.67.1.1 107543 2qedA 258 58.20 2bs2A 660 58.45 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1ff9A 450 58.56 c.2.1.3,d.81.1.2 30039,39954 1u2zA 433 58.77 c.66.1.31 107626 2g76A 335 58.89 2r9zA 463 60.06 2eh6A 375 60.52 2gn4A 344 60.98 2o8nA 265 61.18 1sb8A 352 61.20 c.2.1.2 105410 1gmlA 178 61.62 c.8.5.2 70273 1ri5A 298 61.80 c.66.1.34 97502 2r6jA 318 61.83 2avnA 260 61.88 c.66.1.41 127380 1drwA 273 62.80 c.2.1.3,d.81.1.3 30057,39972 2bkaA 242 63.12 c.2.1.2 128666 2dtxA 264 63.22 1rkxA 357 63.57 c.2.1.2 97631 2d59A 144 63.95 c.2.1.8 131266 2fnuA 375 64.06 c.67.1.4 133831 1zq6A 359 64.14 1h6vA 499 64.20 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1z45A 699 64.41 b.30.5.4,c.2.1.2 124427,124428 1af7A 274 64.49 a.58.1.1,c.66.1.8 17928,34203 2zbwA 335 64.56 1pbeA 394 65.19 c.3.1.2,d.16.1.2 30338,37869 1dliA 402 65.27 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1fl2A 310 65.36 c.3.1.5,c.3.1.5 59869,59870 1qh5A 260 65.67 d.157.1.2 42057 1dv2A 452 66.59 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2yy7A 312 67.61 1drw 273 67.76 2obwA 258 68.99 1uluA 261 69.75 c.2.1.2 113292 1jg1A 235 70.13 c.66.1.7 66661 2bllA 345 70.75 c.2.1.2 128733 1zsyA 357 70.87 1td2A 287 71.84 c.72.1.5 106765 1zk7A 467 72.63 2o3jA 481 72.67 2hmaA 376 72.88 1vefA 395 73.36 c.67.1.4 120018 1p2hA 571 73.83 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2e18A 257 73.88 1bg6 359 74.06 1b5pA 385 74.22 c.67.1.1 90403 2v6oA 596 74.56 2ax3A 502 75.23 c.72.1.4,c.104.1.1 127477,127478 1bg6A 359 75.37 a.100.1.5,c.2.1.6 18810,30214 1x13A 401 76.60 1wwkA 307 77.01 1dl5A 317 78.65 c.66.1.7,d.197.1.1 64720,64721 1wvgA 359 79.11 c.2.1.2 121339 2goyA 275 79.17 1zmdA 474 80.32 1kolA 398 80.36 b.35.1.2,c.2.1.1 77474,77475 1xm8A 254 80.41 d.157.1.2 115475 2v7pA 310 82.17 1eny 268 82.66 1jsxA 207 82.73 c.66.1.20 71846 1jf9A 408 82.84 c.67.1.3 62931 2ih2A 421 83.08 2gmsA 390 83.12 2glxA 332 83.33 1vloA 381 83.38 b.44.2.1,d.250.1.1 108838,108839 1jvbA 347 83.63 b.35.1.2,c.2.1.1 77181,77182 2d1yA 256 84.13 c.2.1.2 131151 2eihA 343 84.29 1yb5A 351 84.40 b.35.1.2,c.2.1.1 116601,116602 3bkwA 243 84.93 1jw9B 249 85.42 c.111.1.1 67377 2gdzA 267 86.02 c.2.1.2 135043 1qorA 327 86.90 b.35.1.2,c.2.1.1 24766,29782 1ibjA 464 87.78 c.67.1.3 62162 1nytA 271 88.23 c.2.1.7,c.58.1.5 86417,86418 1mo9A 523 89.74 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343