# List of top-scoring protein chains for T0471.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pjtA	457	10.89	c.2.1.11,c.90.1.1,e.37.1.1	94778,94779,94780
1pjqA	457	10.90	c.2.1.11,c.90.1.1,e.37.1.1	94766,94767,94768
1rjwA	339	12.39	b.35.1.2,c.2.1.1	97582,97583
2dldA	337	22.34	c.2.1.4,c.23.12.1	30099,31359
2b3tA	276	26.76	c.66.1.30	127796
1t43A	277	26.82	c.66.1.30	106392
2bg9A	370	28.17		
3bofA	566	33.99		
1zkdA	387	35.96	c.66.1.52	125184
2avnA	260	36.10	c.66.1.41	127380
3cggA	195	37.41		
2bgkA	278	47.33	c.2.1.2	128480
1qo8A	566	47.37	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1yvkA	163	47.62	d.108.1.1	124101
1w78A	422	56.73		
1d5tA	433	59.39	c.3.1.3,d.16.1.6	30422,37986
1fmcA	255	61.90	c.2.1.2	29856
2bcwC	58	63.29		
1j49A	333	64.81	c.2.1.4,c.23.12.1	71498,71499
1j4aA	333	64.87	c.2.1.4,c.23.12.1	71502,71503
1lv0A	449	67.12	c.3.1.3,d.16.1.6	91130,91131
1epuA	591	69.37	e.25.1.1	43358
1uf5A	303	71.91	d.160.1.2	107808
1erzA	303	75.40	d.160.1.2	59498
2dfdA	342	75.63		
2dpoA	319	82.95