# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ve3A 227 1.429 c.66.1.43 120010 1l7dA 384 1.580 c.2.1.4,c.23.12.2 77774,77775 2avnA 260 2.010 c.66.1.41 127380 1fp1D 372 2.463 a.4.5.29,c.66.1.12 59939,59940 1pjcA 361 3.959 c.2.1.4,c.23.12.2 30101,31361 1kjqA 391 4.709 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1h2bA 359 4.780 b.35.1.2,c.2.1.1 90543,90544 1fp2A 352 5.221 a.4.5.29,c.66.1.12 59941,59942 1y8cA 246 5.991 c.66.1.43 116563 3c85A 183 6.510 1ri5A 298 6.657 c.66.1.34 97502 2nxcA 254 6.891 c.66.1.39 138739 1ls6A 295 7.905 c.37.1.5 91115 1lssA 140 8.622 c.2.1.9 74246 2hmaA 376 8.908 1kyqA 274 10.26 c.2.1.11,e.37.1.1 73281,73282 1xtpA 254 10.36 c.66.1.42 116031 2g1uA 155 11.23 1qzzA 374 11.26 a.4.5.29,c.66.1.12 96719,96720 2hmvA 144 12.08 c.2.1.9 136615 2aefA 234 13.17 2rbkA 261 13.64 3d2lA 243 13.92 2as0A 396 14.33 b.122.1.9,c.66.1.51 127227,127228 1kyzA 365 14.80 a.4.5.29,c.66.1.12 73312,73313 1x13A 401 14.93 3ladA 476 16.51 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1ks9A 291 16.65 a.100.1.7,c.2.1.6 68857,68858 1tw3A 360 17.31 a.4.5.29,c.66.1.12 107373,107374 1uufA 369 19.00 b.35.1.2,c.2.1.1 100006,100007 1xvaA 292 20.28 c.66.1.5 34183 2r3sA 335 20.39 1im8A 244 20.40 c.66.1.14 66212 1f6yA 262 21.71 c.1.21.2 29673 2frnA 278 21.73 c.66.1.47 133993 2pxxA 215 21.88 1x9iA 302 22.95 c.80.1.1 114997 1ua7A 422 23.15 b.71.1.1,c.1.8.1 107759,107760 1qyrA 252 24.82 c.66.1.24 104657 1wxxA 382 25.99 b.122.1.9,c.66.1.51 121418,121419 1igs 248 26.35 1uirA 314 26.65 c.66.1.17 99429 1yrlA 491 27.10 1qorA 327 27.30 b.35.1.2,c.2.1.1 24766,29782 2cduA 452 28.35 1l1eA 287 28.48 c.66.1.18 73454 1bag 425 29.86 1i1nA 226 29.88 c.66.1.7 71102 1dusA 194 32.94 c.66.1.4 34182 1wznA 252 33.15 c.66.1.43 121525 1ne2A 200 34.54 c.66.1.32 85586 1zq9A 285 35.79 c.66.1.24 125505 2gwhA 298 35.99 3cggA 195 38.31 2v3aA 384 40.37 1wyuA 438 40.40 c.67.1.7 121452 2ip2A 334 40.73 1xxlA 239 41.00 c.66.1.41 116203 1x19A 359 41.54 2rcyA 262 43.72 2h1rA 299 43.86 2rebA 352 45.46 c.37.1.11,d.48.1.1 32282,38767 1f3lA 321 46.53 c.66.1.6 59630 1c1dA 355 47.08 c.2.1.7,c.58.1.1 30270,33918 1g38A 393 47.32 c.66.1.27,d.287.1.1 111567,111568 2dplA 308 47.85 1h1dA 221 48.16 c.66.1.1 83452 1d7yA 408 48.82 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1vid 221 49.45 3canA 182 50.19 2ehbD 143 50.70 2ex4A 241 51.00 c.66.1.42 132516 1poiB 260 51.95 c.124.1.3 34155 2q04A 211 53.64 1reoA 486 53.65 c.3.1.2,d.16.1.5 97325,97326 1p91A 269 54.00 c.66.1.33 94378 1lehA 364 54.44 c.2.1.7,c.58.1.1 30268,33916 2basA 431 54.97 c.1.33.1,d.110.6.2 128244,128245 1gesA 450 56.29 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2cdcA 366 56.41 1qamA 244 56.73 c.66.1.24 34220 1pjzA 203 57.20 c.66.1.36 94794 1gsoA 431 58.00 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1ej0A 180 58.48 c.66.1.2 34179 1mjfA 281 59.77 c.66.1.17 79198 1zud1 251 60.14 1wy5A 317 60.65 c.26.2.5,d.229.1.1 121428,121429 1xdzA 240 62.85 c.66.1.20 115196 2o28A 184 62.88 3by4A 212 63.39 2fk8A 318 63.57 c.66.1.18 133648 1kpgA 287 63.64 c.66.1.18 68735 2f1kA 279 65.07 a.100.1.12,c.2.1.6 132772,132773 2bzgA 232 65.40 c.66.1.36 129559 1sur 215 65.67 1jvbA 347 67.20 b.35.1.2,c.2.1.1 77181,77182 2bg9E 370 68.54 2p7iA 250 68.73 2cf5A 357 70.21 1fmjA 351 71.49 c.37.1.5 59879 1zrhA 274 73.32 1gpjA 404 73.68 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1nhp 447 74.32 2bg9A 370 74.98 3cogA 403 77.84 2dc1A 236 78.53 2iidA 498 78.95 c.3.1.2,d.16.1.5 137426,137427 1nv8A 284 79.90 c.66.1.30 86224 2ffiA 288 81.10 c.1.9.15 133385 1eyzA 392 82.03 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2f7lA 455 82.44 1ta9A 450 83.03 2dulA 378 86.26 1bg6 359 86.29 2fpoA 202 86.41 c.66.1.46 133909 1tx2A 297 86.57 c.1.21.1 107420 1p1cA 199 86.73 c.66.1.16 87669 1ws6A 171 88.71 c.66.1.46 121222 1t3iA 420 88.88 c.67.1.3 106354 1vefA 395 89.54 c.67.1.4 120018 1ni5A 433 89.92 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2i1qA 322 89.99 a.60.4.1,c.37.1.11 136984,136985