# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7dA 384 1.898 c.2.1.4,c.23.12.2 77774,77775 1fp1D 372 2.913 a.4.5.29,c.66.1.12 59939,59940 1kjqA 391 3.243 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1ve3A 227 3.250 c.66.1.43 120010 1fp2A 352 3.294 a.4.5.29,c.66.1.12 59941,59942 2avnA 260 3.565 c.66.1.41 127380 3bxoA 239 3.575 1h2bA 359 4.814 b.35.1.2,c.2.1.1 90543,90544 2nxcA 254 5.017 c.66.1.39 138739 1ri5A 298 5.099 c.66.1.34 97502 2g1uA 155 6.651 1pjcA 361 7.091 c.2.1.4,c.23.12.2 30101,31361 1qzzA 374 7.442 a.4.5.29,c.66.1.12 96719,96720 2hmvA 144 8.123 c.2.1.9 136615 1ls6A 295 9.024 c.37.1.5 91115 2aefA 234 10.85 3c85A 183 11.50 1y8cA 246 11.64 c.66.1.43 116563 2rbkA 261 11.96 2hmaA 376 12.00 1ua7A 422 12.20 b.71.1.1,c.1.8.1 107759,107760 1f6yA 262 12.34 c.1.21.2 29673 1uufA 369 13.27 b.35.1.2,c.2.1.1 100006,100007 1tw3A 360 13.48 a.4.5.29,c.66.1.12 107373,107374 1kyzA 365 13.74 a.4.5.29,c.66.1.12 73312,73313 1x9iA 302 13.92 c.80.1.1 114997 1lssA 140 14.21 c.2.1.9 74246 1bag 425 14.44 2pxxA 215 15.92 1l1eA 287 16.25 c.66.1.18 73454 1xtpA 254 18.38 c.66.1.42 116031 3d2lA 243 18.60 1dusA 194 18.61 c.66.1.4 34182 1kyqA 274 18.78 c.2.1.11,e.37.1.1 73281,73282 2as0A 396 19.45 b.122.1.9,c.66.1.51 127227,127228 2frnA 278 19.96 c.66.1.47 133993 2gwhA 298 21.00 1zrhA 274 21.09 1ir6A 424 22.62 c.107.1.2 71342 1im8A 244 24.61 c.66.1.14 66212 2v3aA 384 24.84 1ks9A 291 24.85 a.100.1.7,c.2.1.6 68857,68858 1i1nA 226 25.13 c.66.1.7 71102 1xvaA 292 25.23 c.66.1.5 34183 3ladA 476 28.24 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2ip2A 334 28.25 2h1rA 299 29.69 1p91A 269 29.95 c.66.1.33 94378 1qyrA 252 33.22 c.66.1.24 104657 1ej0A 180 34.48 c.66.1.2 34179 1lehA 364 34.56 c.2.1.7,c.58.1.1 30268,33916 1uirA 314 36.18 c.66.1.17 99429 1zq9A 285 36.58 c.66.1.24 125505 1pjzA 203 36.80 c.66.1.36 94794 1x13A 401 36.87 2r3sA 335 37.88 2cduA 452 39.17 1f3lA 321 39.71 c.66.1.6 59630 1x19A 359 40.14 1fmjA 351 40.34 c.37.1.5 59879 1g38A 393 41.97 c.66.1.27,d.287.1.1 111567,111568 1eyzA 392 42.69 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1yrlA 491 43.30 2dplA 308 43.55 1hx0A 496 43.63 b.71.1.1,c.1.8.1 61346,61347 1d7yA 408 44.03 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 3cggA 195 44.47 1ne2A 200 44.81 c.66.1.32 85586 1h1dA 221 44.92 c.66.1.1 83452 1wxxA 382 44.94 b.122.1.9,c.66.1.51 121418,121419 2rcyA 262 45.47 1xxlA 239 45.95 c.66.1.41 116203 1nv8A 284 46.08 c.66.1.30 86224 2ogyA 262 46.97 1igs 248 48.23 1vid 221 48.39 2dc1A 236 48.88 3cc8A 230 49.39 1wyuA 438 50.09 c.67.1.7 121452 1qamA 244 51.82 c.66.1.24 34220 1c1dA 355 53.26 c.2.1.7,c.58.1.1 30270,33918 2fk8A 318 53.85 c.66.1.18 133648 1xdzA 240 55.33 c.66.1.20 115196 1lsuA 147 55.46 c.2.1.9 74250 1pl8A 356 55.70 b.35.1.2,c.2.1.1 94878,94879 1vkjA 285 55.96 c.37.1.5 108666 2p7iA 250 57.15 2gpyA 233 57.38 1nhp 447 57.47 1qorA 327 57.96 b.35.1.2,c.2.1.1 24766,29782 3cogA 403 58.26 2basA 431 59.79 c.1.33.1,d.110.6.2 128244,128245 2ouiA 360 59.96 1poiB 260 61.48 c.124.1.3 34155 1wznA 252 62.19 c.66.1.43 121525 1kpgA 287 63.30 c.66.1.18 68735 2bzgA 232 64.70 c.66.1.36 129559 1t8tA 271 66.16 c.37.1.5 106685 1kevA 351 67.17 b.35.1.2,c.2.1.1 24749,29765 2o57A 297 68.33 1p1cA 199 68.76 c.66.1.16 87669 1zud1 251 69.34 1vefA 395 69.41 c.67.1.4 120018 3canA 182 71.81 2cdcA 366 73.10 1sqgA 429 73.41 a.79.1.3,c.66.1.38 105912,105913 2cf5A 357 73.45 2ex4A 241 74.22 c.66.1.42 132516 1jvbA 347 75.84 b.35.1.2,c.2.1.1 77181,77182 3bkxA 275 76.21 2cvjA 180 76.87 2bg9E 370 77.65 3bofA 566 78.29 2o28A 184 80.09 2p41A 305 80.82 1ta9A 450 82.20 2h00A 254 82.23 c.66.1.54 135925 2dkb 433 83.32 1pvvA 315 83.58 c.78.1.1,c.78.1.1 95190,95191 2fpoA 202 84.86 c.66.1.46 133909 2rebA 352 85.89 c.37.1.11,d.48.1.1 32282,38767 1jqbA 351 86.90 b.35.1.2,c.2.1.1 77151,77152 2esrA 177 87.06 c.66.1.46 132344 1l3iA 192 87.38 c.66.1.22 77676 1bg6A 359 88.29 a.100.1.5,c.2.1.6 18810,30214 1gpjA 404 89.26 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1jw9B 249 89.57 c.111.1.1 67377