# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c85A 183 0.8154 1l7dA 384 0.8919 c.2.1.4,c.23.12.2 77774,77775 2rbkA 261 1.219 1h2bA 359 1.393 b.35.1.2,c.2.1.1 90543,90544 1lssA 140 1.790 c.2.1.9 74246 2hmvA 144 1.993 c.2.1.9 136615 2g1uA 155 2.500 1pjcA 361 3.046 c.2.1.4,c.23.12.2 30101,31361 1kjqA 391 3.059 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2nxcA 254 3.381 c.66.1.39 138739 1f6yA 262 4.007 c.1.21.2 29673 2aefA 234 4.045 1uufA 369 4.086 b.35.1.2,c.2.1.1 100006,100007 1reoA 486 4.154 c.3.1.2,d.16.1.5 97325,97326 3ladA 476 4.911 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1qorA 327 5.236 b.35.1.2,c.2.1.1 24766,29782 1ve3A 227 5.807 c.66.1.43 120010 2cf5A 357 5.833 2avnA 260 5.892 c.66.1.41 127380 3bxoA 239 7.030 1x13A 401 7.347 1c1dA 355 7.441 c.2.1.7,c.58.1.1 30270,33918 1i1nA 226 7.599 c.66.1.7 71102 1lehA 364 8.443 c.2.1.7,c.58.1.1 30268,33916 1d7yA 408 8.535 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2ogyA 262 9.264 1s3eA 520 9.505 c.3.1.2,d.16.1.5 98426,98427 1kevA 351 10.05 b.35.1.2,c.2.1.1 24749,29765 1gesA 450 10.41 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2eihA 343 10.65 1jvbA 347 10.69 b.35.1.2,c.2.1.1 77181,77182 1igs 248 10.72 1jg1A 235 10.75 c.66.1.7 66661 2cvjA 180 12.20 1jqbA 351 12.65 b.35.1.2,c.2.1.1 77151,77152 1fp2A 352 13.05 a.4.5.29,c.66.1.12 59941,59942 1kyqA 274 13.34 c.2.1.11,e.37.1.1 73281,73282 1l1eA 287 14.07 c.66.1.18 73454 2iidA 498 14.18 c.3.1.2,d.16.1.5 137426,137427 2gqwA 408 14.41 3canA 182 14.86 1kpgA 287 14.87 c.66.1.18 68735 1q1rA 431 14.89 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2as0A 396 15.58 b.122.1.9,c.66.1.51 127227,127228 2frnA 278 15.60 c.66.1.47 133993 1ls6A 295 15.65 c.37.1.5 91115 2v3aA 384 15.73 2fk8A 318 16.13 c.66.1.18 133648 1pvvA 315 17.05 c.78.1.1,c.78.1.1 95190,95191 1gu7A 364 17.16 b.35.1.2,c.2.1.1 83321,83322 1lsuA 147 17.30 c.2.1.9 74250 1x9iA 302 17.82 c.80.1.1 114997 1fp1D 372 17.84 a.4.5.29,c.66.1.12 59939,59940 1yqdA 366 18.34 1vj0A 380 19.34 b.35.1.2,c.2.1.1 100786,100787 2dplA 308 19.51 2ouiA 360 20.03 1im8A 244 21.68 c.66.1.14 66212 1yqzA 438 22.81 3d2lA 243 23.16 1wyuA 438 23.37 c.67.1.7 121452 1othA 321 23.98 c.78.1.1,c.78.1.1 35260,35261 1p91A 269 25.92 c.66.1.33 94378 3bofA 566 26.32 2vhxA 377 26.63 1xdzA 240 27.07 c.66.1.20 115196 1mf7A 194 28.58 c.62.1.1 84937 2pxxA 215 29.34 1pl8A 356 29.48 b.35.1.2,c.2.1.1 94878,94879 1ymqA 261 29.58 c.108.1.10 123707 1yrlA 491 29.66 1a9xB 379 30.26 c.8.3.1,c.23.16.1 30732,31409 1gsoA 431 30.57 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1y9aA 360 30.58 1nhp 447 30.86 2hmaA 376 31.34 2o57A 297 32.13 1ri5A 298 32.15 c.66.1.34 97502 1oj7A 408 32.49 e.22.1.2 103971 2h6eA 344 33.08 2zbwA 335 33.09 1qzzA 374 33.60 a.4.5.29,c.66.1.12 96719,96720 2e7fA 262 34.05 1ir6A 424 34.88 c.107.1.2 71342 2cdcA 366 35.17 1kyzA 365 35.28 a.4.5.29,c.66.1.12 73312,73313 2h1rA 299 36.13 1ru8A 232 36.50 c.26.2.1 97849 1poiB 260 36.61 c.124.1.3 34155 2cduA 452 38.17 2ac7A 235 38.48 c.56.2.1 126543 1sqgA 429 38.72 a.79.1.3,c.66.1.38 105912,105913 2gwhA 298 39.32 2f7lA 455 39.44 1vid 221 40.71 2h00A 254 40.91 c.66.1.54 135925 2z3yA 662 41.57 1f8rA 498 42.42 c.3.1.2,d.16.1.5 30410,37974 1y8cA 246 45.45 c.66.1.43 116563 2o28A 184 47.31 1j5xA 342 47.33 c.80.1.1 71591 1sur 215 47.82 1i4nA 251 48.33 c.1.2.4 71114 2gb4A 252 48.57 1bag 425 48.96 1tw3A 360 49.23 a.4.5.29,c.66.1.12 107373,107374 2c3zA 222 50.23 1dl5A 317 50.81 c.66.1.7,d.197.1.1 64720,64721 2bm8A 236 52.48 c.66.1.50 128771 1xvaA 292 53.17 c.66.1.5 34183 2q04A 211 53.32 1h1dA 221 53.48 c.66.1.1 83452 1tx2A 297 53.69 c.1.21.1 107420 2dpoA 319 53.86 1ua7A 422 54.11 b.71.1.1,c.1.8.1 107759,107760 1trb 320 54.46 2ip2A 334 55.02 1z82A 335 56.31 2bzgA 232 58.29 c.66.1.36 129559 2depA 356 59.21 1pjzA 203 59.88 c.66.1.36 94794 1vefA 395 60.20 c.67.1.4 120018 1zcjA 463 60.51 1jsxA 207 60.69 c.66.1.20 71846 1xklA 273 61.48 c.69.1.20 115410 1wy5A 317 62.72 c.26.2.5,d.229.1.1 121428,121429 1dusA 194 62.93 c.66.1.4 34182 2ehbD 143 64.38 1q77A 138 64.40 c.26.2.4 96023 1lluA 342 64.42 b.35.1.2,c.2.1.1 91064,91065 1m6iA 493 64.77 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2dbqA 334 64.97 1ks9A 291 65.94 a.100.1.7,c.2.1.6 68857,68858 2vojA 371 65.94 2ew2A 316 67.66 2v03A 303 68.45 2dc1A 236 68.65 1jr2A 286 68.85 c.113.1.1 67111 1bg6 359 69.42 2d8aA 348 69.52 1b6g 310 70.77 1ede 310 72.92 1zrhA 274 73.09 2rcyA 262 73.12 1j8uA 325 73.14 d.178.1.1 71611 1qamA 244 73.91 c.66.1.24 34220 1wqaA 455 74.00 1qyrA 252 74.59 c.66.1.24 104657 2nacA 393 74.70 c.2.1.4,c.23.12.1 30088,31348 1bg6A 359 74.85 a.100.1.5,c.2.1.6 18810,30214 1fmjA 351 77.97 c.37.1.5 59879 1ws6A 171 78.69 c.66.1.46 121222 1uwvA 433 78.95 b.40.4.12,c.66.1.40 100128,100129 1xxlA 239 78.99 c.66.1.41 116203 1gpjA 404 79.34 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1k77A 260 80.12 c.1.15.5 72096 1t3iA 420 80.38 c.67.1.3 106354 1q0rA 298 80.85 c.69.1.28 95508 2bg9A 370 80.90 1wxxA 382 80.92 b.122.1.9,c.66.1.51 121418,121419 1p1cA 199 81.06 c.66.1.16 87669 1bg4A 302 81.35 c.1.8.3 28806 1ej0A 180 81.78 c.66.1.2 34179 2yxeA 215 81.81 1jq5A 370 82.07 e.22.1.2 67084 1hdoA 206 82.91 c.2.1.2 60965 1zq6A 359 83.35 1ls1A 295 83.60 a.24.13.1,c.37.1.10 78170,78171 2r47A 157 83.93 2d0iA 333 84.07 1nhsA 447 85.86 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1jdcA 429 86.92 b.71.1.1,c.1.8.1 27789,28776 1fecA 490 87.70 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2ohwA 133 89.70 1g38A 393 89.79 c.66.1.27,d.287.1.1 111567,111568 2pebA 122 89.82