# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ve3A 227 1.013 c.66.1.43 120010 2avnA 260 1.399 c.66.1.41 127380 1lssA 140 1.903 c.2.1.9 74246 1x13A 401 3.108 3c85A 183 3.318 1fp1D 372 3.559 a.4.5.29,c.66.1.12 59939,59940 1l7dA 384 3.784 c.2.1.4,c.23.12.2 77774,77775 2hmvA 144 3.942 c.2.1.9 136615 1h2bA 359 4.103 b.35.1.2,c.2.1.1 90543,90544 2g1uA 155 4.279 1fp2A 352 5.960 a.4.5.29,c.66.1.12 59941,59942 2aefA 234 6.030 1kjqA 391 7.663 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1y8cA 246 7.785 c.66.1.43 116563 1ri5A 298 8.134 c.66.1.34 97502 1pjcA 361 8.488 c.2.1.4,c.23.12.2 30101,31361 3ladA 476 8.529 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2rbkA 261 8.531 2nxcA 254 10.25 c.66.1.39 138739 1f6yA 262 10.35 c.1.21.2 29673 1kyqA 274 11.31 c.2.1.11,e.37.1.1 73281,73282 1ls6A 295 12.52 c.37.1.5 91115 1gesA 450 13.39 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1xtpA 254 13.56 c.66.1.42 116031 1reoA 486 15.59 c.3.1.2,d.16.1.5 97325,97326 1im8A 244 16.92 c.66.1.14 66212 2pxxA 215 17.20 1x9iA 302 17.26 c.80.1.1 114997 1lsuA 147 18.70 c.2.1.9 74250 1bag 425 19.77 1qorA 327 20.40 b.35.1.2,c.2.1.1 24766,29782 1qzzA 374 20.53 a.4.5.29,c.66.1.12 96719,96720 1poiB 260 22.28 c.124.1.3 34155 1uufA 369 25.76 b.35.1.2,c.2.1.1 100006,100007 3d2lA 243 26.01 1xvaA 292 27.78 c.66.1.5 34183 1trb 320 28.36 1lqtA 456 29.65 c.3.1.1,c.4.1.1 74198,74199 1kyzA 365 30.48 a.4.5.29,c.66.1.12 73312,73313 2ehbD 143 30.66 2iidA 498 31.16 c.3.1.2,d.16.1.5 137426,137427 1wznA 252 33.29 c.66.1.43 121525 2o28A 184 33.71 2bg9E 370 33.97 2fk8A 318 34.14 c.66.1.18 133648 1uirA 314 34.91 c.66.1.17 99429 1gsoA 431 35.42 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2cvjA 180 35.94 2gwhA 298 36.20 2rebA 352 36.70 c.37.1.11,d.48.1.1 32282,38767 1wyuA 438 36.74 c.67.1.7 121452 1xdzA 240 36.84 c.66.1.20 115196 2ogyA 262 37.08 1i1nA 226 37.16 c.66.1.7 71102 2h1rA 299 37.28 1kpgA 287 37.45 c.66.1.18 68735 1lehA 364 38.28 c.2.1.7,c.58.1.1 30268,33916 2hmaA 376 38.32 2bg9A 370 38.59 1ua7A 422 39.44 b.71.1.1,c.1.8.1 107759,107760 2q04A 211 40.33 1ks9A 291 42.81 a.100.1.7,c.2.1.6 68857,68858 2cduA 452 43.14 2cf5A 357 43.49 2zbwA 335 44.09 2as0A 396 44.22 b.122.1.9,c.66.1.51 127227,127228 1s3eA 520 45.29 c.3.1.2,d.16.1.5 98426,98427 2v3aA 384 45.87 1zrhA 274 47.84 1l1eA 287 48.38 c.66.1.18 73454 2frnA 278 51.13 c.66.1.47 133993 2r3sA 335 52.75 1xxlA 239 53.24 c.66.1.41 116203 1q77A 138 53.35 c.26.2.4 96023 1x19A 359 54.18 1igs 248 54.41 2o57A 297 54.50 1zq9A 285 56.01 c.66.1.24 125505 2dplA 308 56.44 3by4A 212 57.44 1fmjA 351 58.69 c.37.1.5 59879 1pjzA 203 59.49 c.66.1.36 94794 3cc8A 230 60.05 2cdcA 366 60.37 1f8rA 498 60.81 c.3.1.2,d.16.1.5 30410,37974 1yrlA 491 61.18 3cggA 195 62.94 1hx0A 496 64.52 b.71.1.1,c.1.8.1 61346,61347 1jvbA 347 64.75 b.35.1.2,c.2.1.1 77181,77182 2gdjA 264 65.07 c.37.1.11 135018 1o7dA 298 65.44 c.6.2.1 86641 2ouiA 360 66.70 1kevA 351 67.61 b.35.1.2,c.2.1.1 24749,29765 2bzgA 232 68.92 c.66.1.36 129559 2e7fA 262 70.23 2z3yA 662 70.82 1qyrA 252 71.18 c.66.1.24 104657 1vefA 395 71.93 c.67.1.4 120018 2hqyA 305 72.00 1sur 215 75.61 1ne2A 200 76.35 c.66.1.32 85586 2i1qA 322 76.85 a.60.4.1,c.37.1.11 136984,136985 1wy5A 317 78.02 c.26.2.5,d.229.1.1 121428,121429 2ozvA 260 80.32 1vkjA 285 80.50 c.37.1.5 108666 1jg1A 235 81.36 c.66.1.7 66661 2basA 431 81.49 c.1.33.1,d.110.6.2 128244,128245 1vj0A 380 83.48 b.35.1.2,c.2.1.1 100786,100787 1pl8A 356 85.50 b.35.1.2,c.2.1.1 94878,94879 2f1kA 279 85.64 a.100.1.12,c.2.1.6 132772,132773 2rcyA 262 87.10 1ux2A 212 89.93 b.96.1.1 100132