# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ve3A 227 1.652 c.66.1.43 120010 2avnA 260 2.019 c.66.1.41 127380 1lssA 140 2.773 c.2.1.9 74246 1x13A 401 4.490 1l7dA 384 4.515 c.2.1.4,c.23.12.2 77774,77775 1fp1D 372 4.622 a.4.5.29,c.66.1.12 59939,59940 1h2bA 359 4.726 b.35.1.2,c.2.1.1 90543,90544 3c85A 183 5.005 2hmvA 144 5.502 c.2.1.9 136615 1fp2A 352 6.196 a.4.5.29,c.66.1.12 59941,59942 1kjqA 391 6.385 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2aefA 234 7.282 2g1uA 155 7.380 3ladA 476 7.664 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1pjcA 361 7.782 c.2.1.4,c.23.12.2 30101,31361 1ri5A 298 8.263 c.66.1.34 97502 1f6yA 262 10.62 c.1.21.2 29673 1kyqA 274 10.73 c.2.1.11,e.37.1.1 73281,73282 2rbkA 261 11.42 1xtpA 254 12.15 c.66.1.42 116031 1y8cA 246 14.65 c.66.1.43 116563 1gesA 450 14.80 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2nxcA 254 15.78 c.66.1.39 138739 1ls6A 295 16.45 c.37.1.5 91115 1reoA 486 16.48 c.3.1.2,d.16.1.5 97325,97326 1qzzA 374 16.61 a.4.5.29,c.66.1.12 96719,96720 1im8A 244 18.48 c.66.1.14 66212 1qorA 327 18.54 b.35.1.2,c.2.1.1 24766,29782 2pxxA 215 18.83 1x9iA 302 19.47 c.80.1.1 114997 1bag 425 22.95 2h1rA 299 24.75 2ogyA 262 25.46 1lsuA 147 26.38 c.2.1.9 74250 1trb 320 27.49 1gsoA 431 27.91 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1poiB 260 28.83 c.124.1.3 34155 3d2lA 243 28.84 2bg9E 370 30.81 2fk8A 318 31.36 c.66.1.18 133648 1xvaA 292 31.64 c.66.1.5 34183 1ks9A 291 33.67 a.100.1.7,c.2.1.6 68857,68858 2rebA 352 37.34 c.37.1.11,d.48.1.1 32282,38767 1xdzA 240 37.62 c.66.1.20 115196 1kpgA 287 37.64 c.66.1.18 68735 1uirA 314 37.74 c.66.1.17 99429 1ua7A 422 38.72 b.71.1.1,c.1.8.1 107759,107760 1uufA 369 38.83 b.35.1.2,c.2.1.1 100006,100007 2gwhA 298 39.08 1lehA 364 39.19 c.2.1.7,c.58.1.1 30268,33916 2ehbD 143 39.75 2bg9A 370 40.05 1wznA 252 40.13 c.66.1.43 121525 1wyuA 438 42.11 c.67.1.7 121452 1l1eA 287 42.34 c.66.1.18 73454 2q04A 211 43.49 2iidA 498 43.94 c.3.1.2,d.16.1.5 137426,137427 1s3eA 520 44.79 c.3.1.2,d.16.1.5 98426,98427 1xxlA 239 45.20 c.66.1.41 116203 2cf5A 357 45.96 1kyzA 365 46.28 a.4.5.29,c.66.1.12 73312,73313 1zq9A 285 46.67 c.66.1.24 125505 2cdcA 366 46.75 2o57A 297 48.02 2frnA 278 48.10 c.66.1.47 133993 1i1nA 226 48.69 c.66.1.7 71102 2cduA 452 49.71 3by4A 212 50.31 2r3sA 335 51.33 1q77A 138 52.03 c.26.2.4 96023 1qyrA 252 53.09 c.66.1.24 104657 1lqtA 456 53.56 c.3.1.1,c.4.1.1 74198,74199 2as0A 396 54.17 b.122.1.9,c.66.1.51 127227,127228 1x19A 359 55.41 2z3yA 662 56.05 1jvbA 347 57.74 b.35.1.2,c.2.1.1 77181,77182 1yrlA 491 58.19 2hmaA 376 59.05 1zrhA 274 59.36 1pl8A 356 61.65 b.35.1.2,c.2.1.1 94878,94879 2rcyA 262 62.00 2o28A 184 62.26 2e7fA 262 63.35 2cvjA 180 63.93 3cc8A 230 64.69 1fmjA 351 68.68 c.37.1.5 59879 2zbwA 335 69.71 1jg1A 235 72.38 c.66.1.7 66661 1f8rA 498 73.10 c.3.1.2,d.16.1.5 30410,37974 1igs 248 73.54 2ozvA 260 74.08 1wxxA 382 74.44 b.122.1.9,c.66.1.51 121418,121419 3cggA 195 74.59 1kevA 351 76.41 b.35.1.2,c.2.1.1 24749,29765 1hx0A 496 76.79 b.71.1.1,c.1.8.1 61346,61347 2f1kA 279 77.69 a.100.1.12,c.2.1.6 132772,132773 1vefA 395 78.06 c.67.1.4 120018 1qamA 244 78.49 c.66.1.24 34220 1ne2A 200 80.91 c.66.1.32 85586 2v3aA 384 81.39 1ux2A 212 83.41 b.96.1.1 100132 2i1qA 322 83.43 a.60.4.1,c.37.1.11 136984,136985 1f3lA 321 83.77 c.66.1.6 59630 1dusA 194 84.02 c.66.1.4 34182 3c6kA 381 86.14 2gdjA 264 86.85 c.37.1.11 135018 2dplA 308 86.91 2ouiA 360 87.02 1vkjA 285 89.37 c.37.1.5 108666