# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ve3A	227	1.338	c.66.1.43	120010
1lssA	140	1.623	c.2.1.9	74246
2avnA	260	1.853	c.66.1.41	127380
1h2bA	359	3.028	b.35.1.2,c.2.1.1	90543,90544
1fp1D	372	3.399	a.4.5.29,c.66.1.12	59939,59940
1x13A	401	3.758		
1l7dA	384	3.767	c.2.1.4,c.23.12.2	77774,77775
3c85A	183	3.927		
2hmvA	144	4.453	c.2.1.9	136615
2g1uA	155	4.728		
2aefA	234	5.294		
1kjqA	391	5.764	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1fp2A	352	5.864	a.4.5.29,c.66.1.12	59941,59942
3ladA	476	6.609	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1ri5A	298	7.401	c.66.1.34	97502
1kyqA	274	9.326	c.2.1.11,e.37.1.1	73281,73282
1pjcA	361	9.679	c.2.1.4,c.23.12.2	30101,31361
2rbkA	261	9.782		
1ls6A	295	10.17	c.37.1.5	91115
1y8cA	246	11.11	c.66.1.43	116563
1xtpA	254	12.32	c.66.1.42	116031
1f6yA	262	12.34	c.1.21.2	29673
2h1rA	299	13.95		
1gesA	450	14.08	c.3.1.5,c.3.1.5,d.87.1.1	30473,30474,40168
2nxcA	254	14.96	c.66.1.39	138739
1x9iA	302	16.73	c.80.1.1	114997
1bag	425	17.19		
2pxxA	215	19.00		
1qzzA	374	19.78	a.4.5.29,c.66.1.12	96719,96720
1lsuA	147	20.33	c.2.1.9	74250
1im8A	244	20.73	c.66.1.14	66212
1reoA	486	21.80	c.3.1.2,d.16.1.5	97325,97326
1qorA	327	22.28	b.35.1.2,c.2.1.1	24766,29782
3d2lA	243	22.54		
1trb	320	23.10		
1gsoA	431	25.55	b.84.2.1,c.30.1.1,d.142.1.2	28240,31647,41492
1uirA	314	26.12	c.66.1.17	99429
1ua7A	422	26.84	b.71.1.1,c.1.8.1	107759,107760
2fk8A	318	27.93	c.66.1.18	133648
1poiB	260	28.51	c.124.1.3	34155
1xvaA	292	28.74	c.66.1.5	34183
2ehbD	143	29.28		
2gwhA	298	32.05		
2bg9E	370	32.16		
1kpgA	287	33.53	c.66.1.18	68735
1lehA	364	34.48	c.2.1.7,c.58.1.1	30268,33916
2ogyA	262	35.32		
1zq9A	285	36.68	c.66.1.24	125505
1kyzA	365	37.04	a.4.5.29,c.66.1.12	73312,73313
1xdzA	240	37.41	c.66.1.20	115196
1ks9A	291	37.54	a.100.1.7,c.2.1.6	68857,68858
2rebA	352	38.01	c.37.1.11,d.48.1.1	32282,38767
2q04A	211	38.76		
1l1eA	287	39.53	c.66.1.18	73454
1wznA	252	39.85	c.66.1.43	121525
2cduA	452	40.70		
2zbwA	335	41.53		
1lqtA	456	42.25	c.3.1.1,c.4.1.1	74198,74199
1qyrA	252	43.65	c.66.1.24	104657
1xxlA	239	43.89	c.66.1.41	116203
2cf5A	357	44.75		
1q77A	138	47.02	c.26.2.4	96023
2hmaA	376	48.02		
3cc8A	230	48.55		
1i1nA	226	49.04	c.66.1.7	71102
1wyuA	438	49.05	c.67.1.7	121452
2bg9A	370	49.12		
2o57A	297	50.60		
1jvbA	347	50.65	b.35.1.2,c.2.1.1	77181,77182
2frnA	278	50.82	c.66.1.47	133993
1zrhA	274	50.95		
1uufA	369	50.95	b.35.1.2,c.2.1.1	100006,100007
1hx0A	496	52.16	b.71.1.1,c.1.8.1	61346,61347
1qamA	244	54.89	c.66.1.24	34220
2iidA	498	55.44	c.3.1.2,d.16.1.5	137426,137427
1yrlA	491	55.56		
2cdcA	366	55.66		
2as0A	396	56.01	b.122.1.9,c.66.1.51	127227,127228
1x19A	359	56.54		
2rcyA	262	57.82		
1igs	248	58.56		
2f1kA	279	58.77	a.100.1.12,c.2.1.6	132772,132773
1jg1A	235	59.11	c.66.1.7	66661
2cvjA	180	61.48		
2o28A	184	62.09		
2v3aA	384	63.26		
2z3yA	662	64.30		
1s3eA	520	66.09	c.3.1.2,d.16.1.5	98426,98427
1fmjA	351	66.36	c.37.1.5	59879
1vefA	395	66.72	c.67.1.4	120018
1dusA	194	67.81	c.66.1.4	34182
2i1qA	322	67.97	a.60.4.1,c.37.1.11	136984,136985
2r3sA	335	68.31		
2bzgA	232	68.98	c.66.1.36	129559
1vkjA	285	71.32	c.37.1.5	108666
2gdjA	264	73.07	c.37.1.11	135018
3c6kA	381	75.25		
3canA	182	77.15		
2e7fA	262	77.27		
1p91A	269	79.03	c.66.1.33	94378
2ip2A	334	79.22		
1f3lA	321	81.36	c.66.1.6	59630
2ozvA	260	81.97		
1vj0A	380	85.92	b.35.1.2,c.2.1.1	100786,100787
2ouiA	360	86.49		
1ne2A	200	86.56	c.66.1.32	85586
3bxoA	239	87.56		
2o3jA	481	88.63