# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1h2bA 359 0.7127 b.35.1.2,c.2.1.1 90543,90544 3bxoA 239 1.412 1kjqA 391 1.583 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 3c85A 183 2.472 2nxcA 254 6.080 c.66.1.39 138739 2avnA 260 6.110 c.66.1.41 127380 1q1rA 431 8.772 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1p1cA 199 9.219 c.66.1.16 87669 2ogyA 262 9.465 1lssA 140 9.581 c.2.1.9 74246 1f6yA 262 10.25 c.1.21.2 29673 1l7dA 384 10.31 c.2.1.4,c.23.12.2 77774,77775 2h1rA 299 10.65 1qorA 327 10.78 b.35.1.2,c.2.1.1 24766,29782 1d7yA 408 11.36 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1fp2A 352 11.41 a.4.5.29,c.66.1.12 59941,59942 1p91A 269 11.74 c.66.1.33 94378 2cduA 452 12.55 3ladA 476 12.62 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1ir6A 424 13.80 c.107.1.2 71342 1b6g 310 13.95 2rbkA 261 15.74 1lsuA 147 15.86 c.2.1.9 74250 1ede 310 16.55 2frnA 278 16.73 c.66.1.47 133993 1qzzA 374 16.79 a.4.5.29,c.66.1.12 96719,96720 2hmvA 144 19.21 c.2.1.9 136615 1dv1A 449 19.58 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1uufA 369 19.77 b.35.1.2,c.2.1.1 100006,100007 2ax3A 502 19.91 c.72.1.4,c.104.1.1 127477,127478 1c1dA 355 21.04 c.2.1.7,c.58.1.1 30270,33918 1eyzA 392 23.51 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1ve3A 227 23.70 c.66.1.43 120010 2v3aA 384 24.18 1z7yA 322 24.95 c.79.1.1 124679 1kyqA 274 26.07 c.2.1.11,e.37.1.1 73281,73282 1trb 320 27.47 1cjcA 460 27.98 c.3.1.1,c.4.1.1 30319,30604 1lehA 364 28.71 c.2.1.7,c.58.1.1 30268,33916 1uwvA 433 29.04 b.40.4.12,c.66.1.40 100128,100129 2as0A 396 29.62 b.122.1.9,c.66.1.51 127227,127228 1jvbA 347 29.68 b.35.1.2,c.2.1.1 77181,77182 2aefA 234 31.79 1zq9A 285 31.91 c.66.1.24 125505 1pjcA 361 32.26 c.2.1.4,c.23.12.2 30101,31361 1ws6A 171 34.18 c.66.1.46 121222 2zbwA 335 38.08 1lqtA 456 38.76 c.3.1.1,c.4.1.1 74198,74199 2g1uA 155 39.06 2cvjA 180 39.11 1x13A 401 39.52 1zrhA 274 39.89 1reoA 486 40.39 c.3.1.2,d.16.1.5 97325,97326 1xhcA 367 40.44 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1gesA 450 41.03 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1ks9A 291 41.16 a.100.1.7,c.2.1.6 68857,68858 3canA 182 42.20 2v03A 303 42.81 2dplA 308 45.04 1kevA 351 45.13 b.35.1.2,c.2.1.1 24749,29765 1hdoA 206 46.52 c.2.1.2 60965 1xklA 273 46.66 c.69.1.20 115410 1tqhA 247 46.79 c.69.1.29 107225 2ouiA 360 46.89 1nhp 447 47.29 1o58A 303 47.39 c.79.1.1 92491 2hqyA 305 48.88 1qgdA 662 49.47 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1d4fA 431 51.08 c.2.1.4,c.23.12.3 30110,31370 1qyrA 252 52.68 c.66.1.24 104657 1vid 221 52.89 2gqwA 408 53.68 1gsoA 431 54.95 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2ehhA 294 55.43 1ls6A 295 57.04 c.37.1.5 91115 1o5kA 306 57.07 c.1.10.1 92504 1u2eA 289 57.21 1f8rA 498 57.69 c.3.1.2,d.16.1.5 30410,37974 3cvoA 202 57.74 1h1dA 221 59.17 c.66.1.1 83452 2dc1A 236 60.10 3c24A 286 60.15 1s3iA 310 60.55 b.46.1.1,c.65.1.1 98435,98436 1z7wA 322 61.76 c.79.1.1 124674 2bg9E 370 62.11 2eihA 343 62.75 3d0cA 314 64.05 1m6iA 493 65.14 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1f74A 293 65.63 c.1.10.1 29079 1xkyA 301 65.77 c.1.10.1 122094 2pqmA 343 66.25 1qamA 244 66.35 c.66.1.24 34220 1ur4A 399 66.41 c.1.8.3 113402 1tw3A 360 66.50 a.4.5.29,c.66.1.12 107373,107374 1dtwB 342 66.59 c.36.1.7,c.48.1.2 31828,33102 2purA 292 66.85 1xngA 268 68.29 c.26.2.1 122186 1jg1A 235 69.09 c.66.1.7 66661 1ua7A 422 70.25 b.71.1.1,c.1.8.1 107759,107760 1v8bA 479 70.75 c.2.1.4,c.23.12.3 113564,113565 1iuhA 198 72.25 d.61.1.2 83711 2q04A 211 73.84 2vhxA 377 74.65 1n7hA 381 75.46 c.2.1.2 80250 2h00A 254 75.88 c.66.1.54 135925 1y9aA 360 77.22 1v9wA 130 77.92 c.47.1.16 108453 1ehyA 294 78.09 c.69.1.11 34693 1id1A 153 80.11 c.2.1.9 62286 2p7iA 250 80.14 1zq6A 359 80.73 1q0rA 298 80.83 c.69.1.28 95508 2hmaA 376 80.91 1bag 425 80.95 2basA 431 82.39 c.1.33.1,d.110.6.2 128244,128245 1ni5A 433 83.66 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1fp1D 372 85.19 a.4.5.29,c.66.1.12 59939,59940 1wy5A 317 85.39 c.26.2.5,d.229.1.1 121428,121429 2axqA 467 85.83 1e39A 571 86.55 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1yqzA 438 87.29 2gdjA 264 87.47 c.37.1.11 135018 1tx2A 297 88.93 c.1.21.1 107420 1uk8A 282 89.54 c.69.1.10 107907