# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1l7dA 384 1.497 c.2.1.4,c.23.12.2 77774,77775 2avnA 260 1.861 c.66.1.41 127380 1h2bA 359 2.830 b.35.1.2,c.2.1.1 90543,90544 3c85A 183 3.980 2hmvA 144 4.234 c.2.1.9 136615 1qorA 327 4.937 b.35.1.2,c.2.1.1 24766,29782 1x13A 401 5.758 1pjcA 361 6.272 c.2.1.4,c.23.12.2 30101,31361 2rbkA 261 6.456 2nxcA 254 6.808 c.66.1.39 138739 1fp2A 352 7.069 a.4.5.29,c.66.1.12 59941,59942 2aefA 234 8.252 1lssA 140 8.670 c.2.1.9 74246 1kjqA 391 8.777 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2g1uA 155 9.549 1fp1D 372 10.24 a.4.5.29,c.66.1.12 59939,59940 1f6yA 262 10.94 c.1.21.2 29673 1uufA 369 11.46 b.35.1.2,c.2.1.1 100006,100007 1c1dA 355 11.89 c.2.1.7,c.58.1.1 30270,33918 1i1nA 226 13.55 c.66.1.7 71102 1qzzA 374 14.02 a.4.5.29,c.66.1.12 96719,96720 1kyqA 274 15.37 c.2.1.11,e.37.1.1 73281,73282 2as0A 396 15.61 b.122.1.9,c.66.1.51 127227,127228 3ladA 476 16.32 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1uirA 314 18.03 c.66.1.17 99429 2frnA 278 18.27 c.66.1.47 133993 1dusA 194 18.31 c.66.1.4 34182 1ve3A 227 18.76 c.66.1.43 120010 1lehA 364 19.70 c.2.1.7,c.58.1.1 30268,33916 2h1rA 299 20.06 1kevA 351 20.64 b.35.1.2,c.2.1.1 24749,29765 1jqbA 351 21.33 b.35.1.2,c.2.1.1 77151,77152 1jvbA 347 21.91 b.35.1.2,c.2.1.1 77181,77182 2ehbD 143 21.93 1ls6A 295 22.17 c.37.1.5 91115 1x9iA 302 23.95 c.80.1.1 114997 1uwvA 433 24.03 b.40.4.12,c.66.1.40 100128,100129 1zrhA 274 24.37 1p91A 269 24.38 c.66.1.33 94378 1poiB 260 24.64 c.124.1.3 34155 1tw3A 360 25.15 a.4.5.29,c.66.1.12 107373,107374 1ua7A 422 25.36 b.71.1.1,c.1.8.1 107759,107760 1bag 425 25.88 1xdzA 240 27.77 c.66.1.20 115196 2hmaA 376 28.44 1kyzA 365 29.52 a.4.5.29,c.66.1.12 73312,73313 3canA 182 30.98 1trb 320 31.44 2dplA 308 31.59 2v3aA 384 32.19 2cf5A 357 32.81 1reoA 486 34.41 c.3.1.2,d.16.1.5 97325,97326 1ws6A 171 34.45 c.66.1.46 121222 1gsoA 431 34.62 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1zq9A 285 34.77 c.66.1.24 125505 1wxxA 382 36.24 b.122.1.9,c.66.1.51 121418,121419 1lsuA 147 37.13 c.2.1.9 74250 2fpoA 202 37.61 c.66.1.46 133909 2iidA 498 37.65 c.3.1.2,d.16.1.5 137426,137427 1gu7A 364 39.38 b.35.1.2,c.2.1.1 83321,83322 1p1cA 199 40.02 c.66.1.16 87669 1xxlA 239 40.24 c.66.1.41 116203 2ouiA 360 40.25 2fhpA 187 41.07 c.66.1.46 133495 1sur 215 41.76 1l1eA 287 42.69 c.66.1.18 73454 2o28A 184 43.52 1wyuA 438 43.61 c.67.1.7 121452 2r3sA 335 43.71 1ne2A 200 43.96 c.66.1.32 85586 2bg9E 370 44.28 1im8A 244 44.65 c.66.1.14 66212 2ogyA 262 45.14 2vhxA 377 45.42 2fk8A 318 46.15 c.66.1.18 133648 2bg9A 370 46.19 2cdcA 366 50.67 1ru8A 232 50.78 c.26.2.1 97849 1lqtA 456 51.73 c.3.1.1,c.4.1.1 74198,74199 1d7yA 408 51.81 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1vid 221 52.75 2basA 431 54.26 c.1.33.1,d.110.6.2 128244,128245 1mjfA 281 54.85 c.66.1.17 79198 1gesA 450 55.87 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2gwhA 298 56.13 1q77A 138 56.82 c.26.2.4 96023 2cduA 452 56.83 1s3eA 520 58.02 c.3.1.2,d.16.1.5 98426,98427 2h00A 254 59.31 c.66.1.54 135925 1qyrA 252 60.84 c.66.1.24 104657 1ri5A 298 61.86 c.66.1.34 97502 1ks9A 291 62.39 a.100.1.7,c.2.1.6 68857,68858 1y8cA 246 63.39 c.66.1.43 116563 1sqgA 429 63.94 a.79.1.3,c.66.1.38 105912,105913 2o57A 297 64.91 1nhp 447 65.77 2bm8A 236 66.32 c.66.1.50 128771 1nv8A 284 67.63 c.66.1.30 86224 2rcyA 262 68.34 2dulA 378 68.91 2ho4A 259 69.23 1igs 248 72.27 2h6eA 344 73.26 1dv1A 449 73.47 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2hqyA 305 73.67 2pxxA 215 75.03 3by4A 212 76.44 1xvaA 292 80.36 c.66.1.5 34183 1yqdA 366 83.20 3c6kA 381 84.14 1xtpA 254 87.26 c.66.1.42 116031 1y9aA 360 87.33 2zbwA 335 87.78 1dl5A 317 88.00 c.66.1.7,d.197.1.1 64720,64721 1ldg 316 88.72 1pl8A 356 89.55 b.35.1.2,c.2.1.1 94878,94879 1gpjA 404 89.74 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453