# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2avnA 260 0.3737 c.66.1.41 127380 1kjqA 391 1.042 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 3c85A 183 1.374 1ve3A 227 1.721 c.66.1.43 120010 1qorA 327 1.733 b.35.1.2,c.2.1.1 24766,29782 1h2bA 359 2.337 b.35.1.2,c.2.1.1 90543,90544 1fp1D 372 2.415 a.4.5.29,c.66.1.12 59939,59940 1y8cA 246 2.988 c.66.1.43 116563 1reoA 486 3.481 c.3.1.2,d.16.1.5 97325,97326 1fp2A 352 3.524 a.4.5.29,c.66.1.12 59941,59942 1wxxA 382 4.268 b.122.1.9,c.66.1.51 121418,121419 2cf5A 357 4.587 1lssA 140 4.615 c.2.1.9 74246 2hmvA 144 4.954 c.2.1.9 136615 2g1uA 155 6.015 1x13A 401 6.391 2o57A 297 6.758 2nxcA 254 7.019 c.66.1.39 138739 1eyzA 392 7.404 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1l3iA 192 7.507 c.66.1.22 77676 2bg9E 370 8.290 2aefA 234 9.272 3cggA 195 10.33 2ze0A 555 10.44 1q1rA 431 11.07 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2h1rA 299 11.46 1xngA 268 11.85 c.26.2.1 122186 1x9iA 302 13.03 c.80.1.1 114997 1lsuA 147 13.74 c.2.1.9 74250 1zrhA 274 13.88 1jvbA 347 14.10 b.35.1.2,c.2.1.1 77181,77182 1f8rA 498 14.36 c.3.1.2,d.16.1.5 30410,37974 1gnd 447 14.85 1id1A 153 14.97 c.2.1.9 62286 2iidA 498 15.39 c.3.1.2,d.16.1.5 137426,137427 1pjcA 361 15.44 c.2.1.4,c.23.12.2 30101,31361 1c1dA 355 16.24 c.2.1.7,c.58.1.1 30270,33918 1ni5A 433 16.35 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1jqbA 351 16.38 b.35.1.2,c.2.1.1 77151,77152 1ws6A 171 16.66 c.66.1.46 121222 1kevA 351 16.79 b.35.1.2,c.2.1.1 24749,29765 1eg5A 384 16.86 c.67.1.3 34429 1bf2 750 17.18 1qzzA 374 17.46 a.4.5.29,c.66.1.12 96719,96720 1tw3A 360 18.08 a.4.5.29,c.66.1.12 107373,107374 1p0kA 349 18.14 c.1.4.1 87648 2frnA 278 18.56 c.66.1.47 133993 1vj0A 380 20.56 b.35.1.2,c.2.1.1 100786,100787 1im8A 244 20.90 c.66.1.14 66212 1nhp 447 21.95 1zq9A 285 22.12 c.66.1.24 125505 1i1nA 226 22.26 c.66.1.7 71102 2culA 232 22.38 c.3.1.7 130813 1kyqA 274 22.46 c.2.1.11,e.37.1.1 73281,73282 1wlyA 333 22.70 1xxlA 239 23.12 c.66.1.41 116203 2hmaA 376 23.24 1y9aA 360 24.08 1ru8A 232 25.05 c.26.2.1 97849 1ri5A 298 27.53 c.66.1.34 97502 3d2lA 243 27.67 2ouiA 360 27.91 1ls6A 295 28.40 c.37.1.5 91115 1gu7A 364 28.50 b.35.1.2,c.2.1.1 83321,83322 1w78A 422 29.52 1cjcA 460 33.30 c.3.1.1,c.4.1.1 30319,30604 1qyrA 252 33.75 c.66.1.24 104657 1p1cA 199 34.59 c.66.1.16 87669 2rcyA 262 35.75 1l7dA 384 35.90 c.2.1.4,c.23.12.2 77774,77775 2as0A 396 36.51 b.122.1.9,c.66.1.51 127227,127228 3bxoA 239 36.54 2cmgA 262 36.97 1qamA 244 37.47 c.66.1.24 34220 1jg1A 235 38.06 c.66.1.7 66661 2bzgA 232 39.69 c.66.1.36 129559 1yrlA 491 39.71 2h6eA 344 39.89 1kpgA 287 40.43 c.66.1.18 68735 2fhpA 187 41.16 c.66.1.46 133495 3ladA 476 41.48 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1vid 221 42.30 1iuhA 198 42.98 d.61.1.2 83711 2rebA 352 43.56 c.37.1.11,d.48.1.1 32282,38767 2fcaA 213 44.22 c.66.1.53 133262 1d3cA 686 44.28 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2pxxA 215 44.50 1h1dA 221 44.69 c.66.1.1 83452 1p3dA 475 45.45 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2ehbD 143 45.83 2fk8A 318 46.29 c.66.1.18 133648 1dusA 194 47.35 c.66.1.4 34182 3canA 182 47.80 1xnzA 264 49.02 d.127.1.1 115673 1p91A 269 49.11 c.66.1.33 94378 2vhxA 377 50.16 2fpoA 202 50.67 c.66.1.46 133909 2e7fA 262 51.93 1iomA 377 52.24 a.103.1.1 83698 1vkjA 285 52.71 c.37.1.5 108666 1jsxA 207 53.74 c.66.1.20 71846 2q0sA 216 54.67 1ne2A 200 54.76 c.66.1.32 85586 1xtpA 254 54.92 c.66.1.42 116031 3c24A 286 55.59 1q77A 138 56.60 c.26.2.4 96023 2eihA 343 56.69 2bm8A 236 56.94 c.66.1.50 128771 2ganA 190 58.53 d.108.1.1 134889 1pvvA 315 58.84 c.78.1.1,c.78.1.1 95190,95191 1eu8A 409 59.05 c.94.1.1 59502 1o58A 303 59.55 c.79.1.1 92491 1yzhA 214 59.81 c.66.1.53 124277 1nv8A 284 60.20 c.66.1.30 86224 1a9xB 379 62.24 c.8.3.1,c.23.16.1 30732,31409 1sur 215 63.70 3cvoA 202 64.02 1vl5A 260 64.78 c.66.1.41 108720 1g8aA 227 65.80 c.66.1.3 90506 2rjoA 332 66.85 1xvaA 292 66.95 c.66.1.5 34183 1igs 248 68.27 2bg9A 370 69.20 1oj7A 408 70.91 e.22.1.2 103971 2gqwA 408 71.08 1i4nA 251 71.28 c.1.2.4 71114 1wy5A 317 71.51 c.26.2.5,d.229.1.1 121428,121429 1ks9A 291 72.65 a.100.1.7,c.2.1.6 68857,68858 1yvkA 163 72.93 d.108.1.1 124101 1rcuA 195 73.01 c.129.1.1 97295 1inlA 296 73.37 c.66.1.17 66220 1vheA 373 73.94 b.49.3.1,c.56.5.4 100669,100670 1igwA 434 74.22 c.1.12.7 62370 2z20A 432 76.41 1bf2A 750 78.44 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 3by4A 212 79.07 2depA 356 79.15 2gpyA 233 80.30 1yqtA 538 80.98 1d5tA 433 82.13 c.3.1.3,d.16.1.6 30422,37986 2ip2A 334 82.73 1jndA 420 82.99 c.1.8.5,d.26.3.1 71757,71758 1ldg 316 84.23 2ho4A 259 84.25 1vlmA 219 84.85 c.66.1.41 108836 2absA 383 85.79 c.72.1.1 126534 1l1eA 287 86.02 c.66.1.18 73454 1ej0A 180 86.96 c.66.1.2 34179 1z7yA 322 87.49 c.79.1.1 124679 1bag 425 88.61 1dv1A 449 88.71 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2esrA 177 89.13 c.66.1.46 132344 1sqgA 429 89.23 a.79.1.3,c.66.1.38 105912,105913